One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/dyads_m9/peak-motifs_dyads_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/dyads_m9/peak-motifs_dyads_m9_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: dyads_m9_shift3 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m9_shift3 (dyads_m9) |
 |
|
|
; dyads_m9; m=0 (reference); ncol1=10; shift=3; ncol=13; ---ykCTTTTCyy
; Alignment reference
a 0 0 0 92 123 0 0 0 9 1 0 102 117
c 0 0 0 168 84 511 0 0 0 0 511 145 140
g 0 0 0 83 166 0 0 0 0 0 0 123 116
t 0 0 0 168 138 0 511 511 502 510 0 141 138
|
| Kr_rc_shift0 (Kr_rc) |
 |
|
|
; dyads_m9 versus Kr_rc; m=1/1; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.40095; taACCCtTTt---
; cor=; Ncor=
a 5 30 40 1 1 2 5 2 1 5 0 0 0
c 7 4 2 34 39 41 7 2 3 9 0 0 0
g 6 5 0 4 0 0 10 8 3 7 0 0 0
t 27 6 3 6 5 2 23 33 38 24 0 0 0
|