One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: oligos_6-8nt_m3_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6-8nt_m3_shift0 (oligos_6-8nt_m3) |
 |
|
|
; oligos_6-8nt_m3; m=0 (reference); ncol1=14; shift=0; ncol=14; wygaATCGATtcgw
; Alignment reference
a 150 135 100 346 500 15 17 13 517 41 114 79 141 169
c 131 157 107 66 18 18 525 10 18 7 42 283 129 120
g 119 130 283 42 7 18 12 527 18 15 67 107 160 129
t 167 145 77 113 42 516 13 17 14 504 344 98 137 149
|
| Dref_shift2 (Dref) |
 |
|
|
; oligos_6-8nt_m3 versus Dref; m=1/1; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.508009; --aTAwCGATAr--
; cor=; Ncor=
a 0 0 6.66667 1.11111 7.77778 3.33333 0 1.11111 10 0 7.77778 3.33333 0 0
c 0 0 1.11111 0 1.11111 0 10 0 0 0 1.11111 0 0 0
g 0 0 0 1.11111 0 0 0 8.88889 0 0 1.11111 6.66667 0 0
t 0 0 2.22222 7.77778 1.11111 6.66667 0 0 0 10 0 0 0 0
|