/var/www/html/rsat/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_disco_compa
 Matrices
	file1	21 matrices	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	10	448
		file1	2	13	813
		file1	3	17	1157
		file1	4	14	567
		file1	5	12	594
		file1	6	15	500
		file1	7	13	1152
		file1	8	16	1237
		file1	9	10	428
		file1	10	10	429
		file1	11	12	571
		...	11 more matrices
	file2	21 matrices	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		10		448
		file2		2		13		813
		file2		3		17		1157
		file2		4		14		567
		file2		5		12		594
		file2		6		15		500
		file2		7		13		1152
		file2		8		16		1237
		file2		9		10		428
		file2		10		10		429
		file2		11		12		571
		...	11 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m9 dyads_m9 dyads_m9 dyads_m9 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m5 oligos_6-8nt_m5 oligos_6-8nt_m5 oligos_6-8nt_m5 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
dyads_m8 dyads_m8 dyads_m8 dyads_m8 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m10 oligos_6-8nt_m10 oligos_6-8nt_m10 oligos_6-8nt_m10 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m2 oligos_6-8nt_m2 oligos_6-8nt_m2 oligos_6-8nt_m2 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
dyads_m3 dyads_m3 dyads_m3 dyads_m3 1.000 1.000 18 18 18 18 1.0000 1.0000 1.0000 D 0
dyads_m7 dyads_m7 dyads_m7 dyads_m7 1.000 1.000 21 21 21 21 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m9 oligos_6-8nt_m9 oligos_6-8nt_m9 oligos_6-8nt_m9 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m4 dyads_m4 dyads_m4 dyads_m4 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m8 oligos_6-8nt_m8 oligos_6-8nt_m8 oligos_6-8nt_m8 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m3 oligos_6-8nt_m3 oligos_6-8nt_m3 oligos_6-8nt_m3 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m6 oligos_6-8nt_m6 oligos_6-8nt_m6 oligos_6-8nt_m6 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
dyads_m6 dyads_m6 dyads_m6 dyads_m6 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m1 oligos_6-8nt_m1 oligos_6-8nt_m1 oligos_6-8nt_m1 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
dyads_m2 dyads_m2 dyads_m2 dyads_m2 1.000 1.000 20 20 20 20 1.0000 1.0000 1.0000 D 0
positions_6-8nt_m1 positions_6-8nt_m1 positions_6-8nt_m1 positions_6-8nt_m1 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m5 dyads_m5 dyads_m5 dyads_m5 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
dyads_m10 dyads_m10 dyads_m10 dyads_m10 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m4 oligos_6-8nt_m4 oligos_6-8nt_m4 oligos_6-8nt_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
dyads_m1 dyads_m1 dyads_m1 dyads_m1 1.000 1.000 19 19 19 19 1.0000 1.0000 1.0000 D 0
oligos_6-8nt_m7 oligos_6-8nt_m7 oligos_6-8nt_m7 oligos_6-8nt_m7 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
dyads_m2 dyads_m7 dyads_m2 dyads_m7 0.990 0.943 20 21 20 21 0.9524 1.0000 0.9524 R 0
dyads_m7 dyads_m2 dyads_m7 dyads_m2 0.990 0.943 21 20 20 21 0.9524 0.9524 1.0000 R 1
oligos_6-8nt_m2 dyads_m1 oligos_6-8nt_m2 dyads_m1 0.965 0.864 17 19 17 19 0.8947 1.0000 0.8947 D -1
dyads_m1 oligos_6-8nt_m2 dyads_m1 oligos_6-8nt_m2 0.965 0.864 19 17 17 19 0.8947 0.8947 1.0000 D 1
dyads_m6 dyads_m5 dyads_m6 dyads_m5 0.835 0.835 24 24 24 24 1.0000 1.0000 1.0000 D 0
dyads_m5 dyads_m6 dyads_m5 dyads_m6 0.835 0.835 24 24 24 24 1.0000 1.0000 1.0000 D 0
dyads_m10 oligos_6-8nt_m6 dyads_m10 oligos_6-8nt_m6 0.885 0.817 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_6-8nt_m6 dyads_m10 oligos_6-8nt_m6 dyads_m10 0.885 0.817 13 12 12 13 0.9231 0.9231 1.0000 R 1
oligos_6-8nt_m7 dyads_m2 oligos_6-8nt_m7 dyads_m2 0.969 0.775 16 20 16 20 0.8000 1.0000 0.8000 R 0
dyads_m2 oligos_6-8nt_m7 dyads_m2 oligos_6-8nt_m7 0.969 0.775 20 16 16 20 0.8000 0.8000 1.0000 R 4
dyads_m6 dyads_m1 dyads_m6 dyads_m1 0.936 0.741 24 19 19 24 0.7917 0.7917 1.0000 D 0
dyads_m1 dyads_m6 dyads_m1 dyads_m6 0.936 0.741 19 24 19 24 0.7917 1.0000 0.7917 D 0
dyads_m1 dyads_m5 dyads_m1 dyads_m5 0.919 0.727 19 24 19 24 0.7917 1.0000 0.7917 D 0
dyads_m5 dyads_m1 dyads_m5 dyads_m1 0.919 0.727 24 19 19 24 0.7917 0.7917 1.0000 D 0
dyads_m7 oligos_6-8nt_m7 dyads_m7 oligos_6-8nt_m7 0.954 0.727 21 16 16 21 0.7619 0.7619 1.0000 D 5
oligos_6-8nt_m7 dyads_m7 oligos_6-8nt_m7 dyads_m7 0.954 0.727 16 21 16 21 0.7619 1.0000 0.7619 D -5
dyads_m8 positions_6-8nt_m1 dyads_m8 positions_6-8nt_m1 0.846 0.692 10 10 9 11 0.8182 0.9000 0.9000 D 1
positions_6-8nt_m1 dyads_m8 positions_6-8nt_m1 dyads_m8 0.846 0.692 10 10 9 11 0.8182 0.9000 0.9000 D -1
dyads_m6 oligos_6-8nt_m2 dyads_m6 oligos_6-8nt_m2 0.938 0.664 24 17 17 24 0.7083 0.7083 1.0000 D 1
oligos_6-8nt_m2 dyads_m6 oligos_6-8nt_m2 dyads_m6 0.938 0.664 17 24 17 24 0.7083 1.0000 0.7083 D -1
dyads_m5 oligos_6-8nt_m2 dyads_m5 oligos_6-8nt_m2 0.894 0.633 24 17 17 24 0.7083 0.7083 1.0000 D 1
oligos_6-8nt_m2 dyads_m5 oligos_6-8nt_m2 dyads_m5 0.894 0.633 17 24 17 24 0.7083 1.0000 0.7083 D -1
oligos_6-8nt_m9 oligos_6-8nt_m10 oligos_6-8nt_m9 oligos_6-8nt_m10 0.741 0.618 10 12 10 12 0.8333 1.0000 0.8333 D -2
oligos_6-8nt_m10 oligos_6-8nt_m9 oligos_6-8nt_m10 oligos_6-8nt_m9 0.741 0.618 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_6-8nt_m6 dyads_m3 oligos_6-8nt_m6 dyads_m3 0.853 0.616 13 18 13 18 0.7222 1.0000 0.7222 D -5
dyads_m3 oligos_6-8nt_m6 dyads_m3 oligos_6-8nt_m6 0.853 0.616 18 13 13 18 0.7222 0.7222 1.0000 D 5
dyads_m3 dyads_m10 dyads_m3 dyads_m10 0.797 0.531 18 12 12 18 0.6667 0.6667 1.0000 R 6
dyads_m10 dyads_m3 dyads_m10 dyads_m3 0.797 0.531 12 18 12 18 0.6667 1.0000 0.6667 R 0
oligos_6-8nt_m4 oligos_6-8nt_m2 oligos_6-8nt_m4 oligos_6-8nt_m2 0.743 0.524 12 17 12 17 0.7059 1.0000 0.7059 D -5
oligos_6-8nt_m2 oligos_6-8nt_m4 oligos_6-8nt_m2 oligos_6-8nt_m4 0.743 0.524 17 12 12 17 0.7059 0.7059 1.0000 D 5 
 Host name	rsat
 Job started	2026-01-25.181135
 Job done	2026-01-25.181149
 Seconds	0.84
	user	0.84
	system	0.5
	cuser	10.59
;	csystem	1.59