/var/www/html/rsat/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.tab
 Matrices
	file1	21 matrices	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	10	448
		file1	2	13	813
		file1	3	17	1157
		file1	4	14	567
		file1	5	12	594
		file1	6	15	500
		file1	7	13	1152
		file1	8	16	1237
		file1	9	10	428
		file1	10	10	429
		file1	11	12	571
		...	11 more matrices
	file2	41 matrices	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
		file2		1		6		45.00005
		file2		2		6		18
		file2		3		6		14
		file2		4		8		49.00004
		file2		5		8		18.00005
		file2		6		7		21
		file2		7		11		16
		file2		8		8		8
		file2		9		7		11
		file2		10		8		10
		file2		11		9		13
		...	31 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m7 Trl oligos_6-8nt_m7 Trl 0.826 0.671 16 13 13 16 0.8125 0.8125 1.0000 R 1
oligos_6-8nt_m9 en oligos_6-8nt_m9 en 0.759 0.607 10 8 8 10 0.8000 0.8000 1.0000 R 1
positions_6-8nt_m1 brk positions_6-8nt_m1 brk 0.830 0.581 10 7 7 10 0.7000 0.7000 1.0000 D 0
dyads_m2 Trl dyads_m2 Trl 0.852 0.554 20 13 13 20 0.6500 0.6500 1.0000 D 0
oligos_6-8nt_m9 sd oligos_6-8nt_m9 sd 0.773 0.535 10 12 9 13 0.6923 0.9000 0.7500 R 1
dyads_m10 br-Z4 dyads_m10 br-Z4 0.792 0.528 12 8 8 12 0.6667 0.6667 1.0000 D 1
dyads_m10 hb dyads_m10 hb 0.702 0.527 12 9 9 12 0.7500 0.7500 1.0000 R 2
dyads_m7 Trl dyads_m7 Trl 0.842 0.521 21 13 13 21 0.6190 0.6190 1.0000 R 8
oligos_6-8nt_m3 Dref oligos_6-8nt_m3 Dref 0.711 0.508 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6-8nt_m6 hb oligos_6-8nt_m6 hb 0.726 0.503 13 9 9 13 0.6923 0.6923 1.0000 D 2
oligos_6-8nt_m6 br-Z4 oligos_6-8nt_m6 br-Z4 0.797 0.491 13 8 8 13 0.6154 0.6154 1.0000 R 4
oligos_6-8nt_m9 zen oligos_6-8nt_m9 zen 0.808 0.485 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6-8nt_m4 z oligos_6-8nt_m4 z 0.962 0.481 12 6 6 12 0.5000 0.5000 1.0000 R 2
positions_6-8nt_m1 Mad positions_6-8nt_m1 Mad 0.767 0.472 10 11 8 13 0.6154 0.8000 0.7273 D 2
dyads_m10 Antp dyads_m10 Antp 0.940 0.470 12 6 6 12 0.5000 0.5000 1.0000 R 1
dyads_m10 zen dyads_m10 zen 0.904 0.452 12 6 6 12 0.5000 0.5000 1.0000 R 1
dyads_m10 ap dyads_m10 ap 0.891 0.446 12 6 6 12 0.5000 0.5000 1.0000 R 1
oligos_6-8nt_m5 hb oligos_6-8nt_m5 hb 0.737 0.442 15 9 9 15 0.6000 0.6000 1.0000 D 0
oligos_6-8nt_m6 zen oligos_6-8nt_m6 zen 0.958 0.442 13 6 6 13 0.4615 0.4615 1.0000 D 2
dyads_m10 abd-A dyads_m10 abd-A 0.875 0.438 12 6 6 12 0.5000 0.5000 1.0000 R 0
oligos_6-8nt_m6 Dfd oligos_6-8nt_m6 Dfd 0.709 0.436 13 8 8 13 0.6154 0.6154 1.0000 R 3
oligos_6-8nt_m6 Antp oligos_6-8nt_m6 Antp 0.939 0.433 13 6 6 13 0.4615 0.4615 1.0000 D 6
oligos_6-8nt_m9 ap oligos_6-8nt_m9 ap 0.704 0.422 10 6 6 10 0.6000 0.6000 1.0000 D 2
dyads_m10 ftz dyads_m10 ftz 0.757 0.408 12 8 7 13 0.5385 0.5833 0.8750 R 5
dyads_m9 Kr dyads_m9 Kr 0.745 0.401 10 10 7 13 0.5385 0.7000 0.7000 R -3
oligos_6-8nt_m6 ap oligos_6-8nt_m6 ap 0.868 0.401 13 6 6 13 0.4615 0.4615 1.0000 D 6 
 Host name	rsat
 Job started	2026-01-25.181202
 Job done	2026-01-25.181208
 Seconds	0.51
	user	0.51
	system	0.17
	cuser	4.61
;	csystem	0.78