RSAT - peak-motifs result

Analysis: IDR-final (25/01/2026 18:12)

peak-motifs  -v 1 -title IDR-final -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 10 -minol 6 -maxol 8 -merge_lengths -2str -origin center -motif_db DMMPMM_drosophila tf $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH

motif discovery
positions_6-8nt	positions_6-8nt_m1 assembly: cgccgc (sig=0.10; e-value=0.79) RC: gcggcg positions_6-8nt_m2 : (sig=; e-value=1) RC: positions_6-8nt_m3 : (sig=; e-value=1) RC: positions_6-8nt_m4 : (sig=; e-value=1) RC: positions_6-8nt_m5 : (sig=; e-value=1) RC: positions_6-8nt_m6 : (sig=; e-value=1) RC: positions_6-8nt_m7 : (sig=; e-value=1) RC: positions_6-8nt_m8 : (sig=; e-value=1) RC: positions_6-8nt_m9 : (sig=; e-value=1) RC: positions_6-8nt_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_6-8nt	Not a single significant pattern	[local_words_6-8nt]
oligos_6-8nt	oligos_6-8nt_m1 assembly: catacatac (sig=35.25; e-value=5.6e-36) RC: gtatgtatg oligos_6-8nt_m2 assembly: acacgcacacacg (sig=18.84; e-value=1.4e-19) RC: cgtgtgtgcgtgt oligos_6-8nt_m3 assembly: gaatcgattc (sig=16.80; e-value=1.6e-17) RC: gaatcgattc oligos_6-8nt_m4 assembly: cactcacc (sig=15.75; e-value=1.8e-16) RC: ggtgagtg oligos_6-8nt_m5 assembly: caaacaacaaa (sig=14.73; e-value=1.9e-15) RC: tttgttgtttg oligos_6-8nt_m6 assembly: aataaataa (sig=14.41; e-value=3.9e-15) RC: ttatttatt oligos_6-8nt_m7 assembly: gagagagcgaga (sig=14.19; e-value=6.5e-15) RC: tctcgctctctc oligos_6-8nt_m8 assembly: gacgac (sig=9.16; e-value=6.9e-10) RC: gtcgtc oligos_6-8nt_m9 assembly: aatgaa (sig=8.31; e-value=4.9e-09) RC: ttcatt oligos_6-8nt_m10 assembly: gaactgaa (sig=7.68; e-value=2.1e-08) RC: ttcagttc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
dyads	dyads_m1 assembly: cgcacacacacacaa (sig=139.79; e-value=1.6e-140) RC: ttgtgtgtgtgtgcg dyads_m2 assembly: tctctctctctctctc (sig=106.44; e-value=3.6e-107) RC: gagagagagagagaga dyads_m3 assembly: gaaaatataaataa (sig=83.30; e-value=5e-84) RC: ttatttatattttc dyads_m4 assembly: ggcagcagcg (sig=66.39; e-value=4.1e-67) RC: cgctgctgcc dyads_m5 assembly: cgcacacacaaccacaacaa (sig=139.79; e-value=1.6e-140) RC: ttgttgtggttgtgtgtgcg dyads_m6 assembly: cacacacacacaacaacaac (sig=139.79; e-value=1.6e-140) RC: gttgttgttgtgtgtgtgtg dyads_m7 assembly: ggagagggagagagaga (sig=106.44; e-value=3.6e-107) RC: tctctctctccctctcc dyads_m8 assembly: ccgccg (sig=48.34; e-value=4.6e-49) RC: cggcgg dyads_m9 assembly: cttttc (sig=45.54; e-value=2.9e-46) RC: gaaaag dyads_m10 assembly: ttatttaa (sig=83.30; e-value=5e-84) RC: ttaaataa	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   positions_6-8nt_m1	k-mer sig=0.10; evalue=0.79 gcCGCCGCys SRGCGGCGGC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gcCGCCGCys brk brk D 7 0.7000 0.830 0.581 NA NA Mad Mad D 8 0.6154 0.767 0.472 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 240 (46.97%) Max nb of predicted sites per peak: 6  (.::chr3R:17703915-17705514(.)) Mean nb of predicted sites per peak: 1.52	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6-8nt_m1	k-mer sig=35.25; evalue=5.6e-36 yacATACATACay RTGTATGTATGTR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yacATACATACay Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 223 (43.64%) Max nb of predicted sites per peak: 17  (.::chr2R:17457420-17459210(.)) Mean nb of predicted sites per peak: 2.78	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6-8nt_m2	k-mer sig=18.84; evalue=1.4e-19 acaCACrCACACACrca TGYGTGTGTGYGTGTGT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor acaCACrCACACACrca Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 221 (43.25%) Max nb of predicted sites per peak: 33  (.::chr2R:16102121-16104921(.)) Mean nb of predicted sites per peak: 7.21	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6-8nt_m3	k-mer sig=16.80; evalue=1.6e-17 tcgaATCGATtcga TCGAATCGATTCGA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor tcgaATCGATtcga Dref Dref D 10 0.7143 0.711 0.508 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 89 (17.42%) Max nb of predicted sites per peak: 6  (.::chr3R:5231851-5233058(.)) Mean nb of predicted sites per peak: 2.31	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6-8nt_m4	k-mer sig=15.75; evalue=1.8e-16 csCACTCACcch DGGGTGAGTGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor csCACTCACcch z z R 6 0.5000 0.962 0.481 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 199 (38.94%) Max nb of predicted sites per peak: 6  (.::chr2L:5977215-5983444(.)) Mean nb of predicted sites per peak: 1.53	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_6-8nt_m5	k-mer sig=14.73; evalue=1.9e-15 mrcAAACAACAAAaa TTTTTGTTGTTTGYK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mrcAAACAACAAAaa hb hb D 9 0.6000 0.737 0.442 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 173 (33.86%) Max nb of predicted sites per peak: 7  (.::chr3L:11252071-11252996(.)) Mean nb of predicted sites per peak: 1.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_6-8nt_m6	k-mer sig=14.41; evalue=3.9e-15 wwaaTAAATAAww WWTTATTTATTWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaaTAAATAAww hb hb D 9 0.6923 0.726 0.503 NA NA br-Z4 br-Z4 R 8 0.6154 0.797 0.491 NA NA zen zen D 6 0.4615 0.958 0.442 NA NA Total matches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 211 (41.29%) Max nb of predicted sites per peak: 7  (.::chr3L:21026545-21028213(.)) Mean nb of predicted sites per peak: 1.68	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_6-8nt_m7	k-mer sig=14.19; evalue=6.5e-15 gaGAGAGAGmGAGaga TCTCTCKCTCTCTCTC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gaGAGAGAGmGAGaga Trl Trl R 13 0.8125 0.826 0.671 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 213 (41.68%) Max nb of predicted sites per peak: 33  (.::chr3R:16448938-16449954(.)) Mean nb of predicted sites per peak: 6.99	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_6-8nt_m8	k-mer sig=9.16; evalue=6.9e-10 mcGACGACgr YCGTCGTCGK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mcGACGACgr Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 177 (34.64%) Max nb of predicted sites per peak: 8  (.::chr3R:30043167-30044555(.)) Mean nb of predicted sites per peak: 1.58	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_6-8nt_m9	k-mer sig=8.31; evalue=4.9e-09 waAATGAAaw WTTTCATTTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor waAATGAAaw en en R 8 0.8000 0.759 0.607 NA NA sd sd R 9 0.6923 0.773 0.535 NA NA zen zen D 6 0.6000 0.808 0.485 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 204 (39.92%) Max nb of predicted sites per peak: 4  (.::chr3R:20956900-20957936(.)) Mean nb of predicted sites per peak: 1.43	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   oligos_6-8nt_m10	k-mer sig=7.68; evalue=2.1e-08 wcGAACTGAAad HTTTCAGTTCGW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wcGAACTGAAad Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 60 (11.74%) Max nb of predicted sites per peak: 4  (.::chr2R:23978232-23980754(.)) Mean nb of predicted sites per peak: 1.18	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   dyads_m1	k-mer sig=139.79; evalue=1.6e-140 caCrCACACACACACAcac GTGTGTGTGTGTGTGYGTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor caCrCACACACACACAcac Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 212 (41.49%) Max nb of predicted sites per peak: 37  (.::chr3R:26536315-26537063(.)) Mean nb of predicted sites per peak: 8.83	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   dyads_m2	k-mer sig=106.44; evalue=3.6e-107 tctCtCtCTCTCTCTCTCtc GAGAGAGAGAGAGAGAGAGA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor tctCtCtCTCTCTCTCTCtc Trl Trl D 13 0.6500 0.852 0.554 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 192 (37.57%) Max nb of predicted sites per peak: 38  (.::chr3R:23922007-23923066(.)) Mean nb of predicted sites per peak: 9.22	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   dyads_m3	k-mer sig=83.30; evalue=5e-84 wagAAAATATAAATAaww WWTTATTTATATTTTCTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wagAAAATATAAATAaww Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 267 (52.25%) Max nb of predicted sites per peak: 12  (.::chr3L:11348882-11349962(.)) Mean nb of predicted sites per peak: 2.08	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   dyads_m4	k-mer sig=66.39; evalue=4.1e-67 gcgGCAGCAGCGsc GSCGCTGCTGCCGC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gcgGCAGCAGCGsc Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 194 (37.96%) Max nb of predicted sites per peak: 12  (.::chr3R:11372551-11373306(.)) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   dyads_m5	k-mer sig=139.79; evalue=1.6e-140 caCrCACACACAmmCACAmmmAca TGTKKKTGTGKKTGTGTGTGYGTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor caCrCACACACAmmCACAmmmAca Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 227 (44.42%) Max nb of predicted sites per peak: 31  (.::chr3R:26536315-26537063(.)) Mean nb of predicted sites per peak: 6.65	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 17   dyads_m6	k-mer sig=139.79; evalue=1.6e-140 caCACACACACACAmmmACAmmcr YGKKTGTKKKTGTGTGTGTGTGTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor caCACACACACACAmmmACAmmcr Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 212 (41.49%) Max nb of predicted sites per peak: 33  (.::chr3R:26536315-26537063(.)) Mean nb of predicted sites per peak: 7.74	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 18   dyads_m7	k-mer sig=106.44; evalue=3.6e-107 agrGAGAGrGAGAGAGAGaGa TCTCTCTCTCTCYCTCTCYCT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor agrGAGAGrGAGAGAGAGaGa Trl Trl R 13 0.6190 0.842 0.521 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 196 (38.36%) Max nb of predicted sites per peak: 38  (.::chr3R:23922007-23923066(.)) Mean nb of predicted sites per peak: 8.68	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 19   dyads_m8	k-mer sig=48.34; evalue=4.6e-49 skCCGCCGmc GKCGGCGGMS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor skCCGCCGmc Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 226 (44.23%) Max nb of predicted sites per peak: 5  (.::chr3R:17703915-17705514(.)) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 20   dyads_m9	k-mer sig=45.54; evalue=2.9e-46 ykCTTTTCby RVGAAAAGMR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ykCTTTTCby Kr Kr R 7 0.5385 0.745 0.401 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 239 (46.77%) Max nb of predicted sites per peak: 7  (.::chr3L:11680224-11680702(.)) Mean nb of predicted sites per peak: 1.49	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 21   dyads_m10	k-mer sig=83.30; evalue=5e-84 wwTTATTTAAww WWTTAAATAAWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwTTATTTAAww br-Z4 br-Z4 D 8 0.6667 0.792 0.528 NA NA hb hb R 9 0.7500 0.702 0.527 NA NA Antp Antp R 6 0.5000 0.940 0.470 NA NA Total matches= 7 (4 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 180 (35.23%) Max nb of predicted sites per peak: 4  (.::chr3L:21026545-21028213(.)) Mean nb of predicted sites per peak: 1.48	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title IDR-final -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 10 -minol 6 -maxol 8 -merge_lengths -2str -origin center -motif_db DMMPMM_drosophila tf $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH

Warning: Number of patterns = 255. Exceeds top number = 100. Only the top 100 patterns will be assembled.

Warning: Not a single pattern was found in file tmp/www-data/2026/01/25/peak-motifs.2026-01-25.180941_2026-01-25.180941_K9UVGH/results/local_words_6-8nt/peak-motifs_local_words-2str-noov_6-8nt_windgroup50.tab