position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title S1 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 2616 Sum of sequence lengths 1315716 Min sequence length 0 Max sequence length 1000 Average sequence length 502 Possible positions 1315716 Oligonucleotide statistics: Total occurrences 1308105 Position interval parameters: Position interval 20 Number of windows 50 Total positions 1315716 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 153 2818 2 -24 [-479,-460] -469.5 174 3331 3 -23 [-459,-440] -449.5 202 3789 4 -22 [-439,-420] -429.5 236 4438 5 -21 [-419,-400] -409.5 285 5253 6 -20 [-399,-380] -389.5 325 6126 7 -19 [-379,-360] -369.5 391 7230 8 -18 [-359,-340] -349.5 456 8634 9 -17 [-339,-320] -329.5 530 9793 10 -16 [-319,-300] -309.5 634 11628 11 -15 [-299,-280] -289.5 732 13727 12 -14 [-279,-260] -269.5 878 16087 13 -13 [-259,-240] -249.5 1034 19113 14 -12 [-239,-220] -229.5 1253 22771 15 -11 [-219,-200] -209.5 1568 28466 16 -10 [-199,-180] -189.5 1948 35350 17 -9 [-179,-160] -169.5 2352 43358 18 -8 [-159,-140] -149.5 2616 50950 19 -7 [-139,-120] -129.5 2616 52320 20 -6 [-119,-100] -109.5 2616 52320 21 -5 [-99,-80] -89.5 2616 52320 22 -4 [-79,-60] -69.5 2616 52320 23 -3 [-59,-40] -49.5 2616 52320 24 -2 [-39,-20] -29.5 2616 52320 25 -1 [-19,0] -9.5 2616 52320 26 0 [1,20] 10.5 2616 52320 27 1 [21,40] 30.5 2616 52320 28 2 [41,60] 50.5 2616 52320 29 3 [61,80] 70.5 2616 52320 30 4 [81,100] 90.5 2616 52320 31 5 [101,120] 110.5 2616 52320 32 6 [121,140] 130.5 2616 52320 33 7 [141,160] 150.5 2616 50689 34 8 [161,180] 170.5 2325 42970 35 9 [181,200] 190.5 1924 34983 36 10 [201,220] 210.5 1553 28146 37 11 [221,240] 230.5 1235 22536 38 12 [241,260] 250.5 1023 18962 39 13 [261,280] 270.5 865 15935 40 14 [281,300] 290.5 728 13635 41 15 [301,320] 310.5 629 11528 42 16 [321,340] 330.5 521 9709 43 17 [341,360] 350.5 455 8568 44 18 [361,380] 370.5 387 7160 45 19 [381,400] 390.5 324 6082 46 20 [401,420] 410.5 281 5204 47 21 [421,440] 430.5 235 4398 48 22 [441,460] 450.5 201 3757 49 23 [461,480] 470.5 173 3318 50 24 [481,500] 490.5 152 2794 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 333906 | 163.1 | 49 | 3.6e-14 | 1.4e-13 | 12.84 | 1 | 718 | 857 | 982 | 1148 | 1382 | 1625 | 1818 | 2198 | 2502 | 3012 | 3525 | 4172 | 4759 | 5724 | 7117 | 8912 | 10785 | 12850 | 13141 | 13234 | 13263 | 13416 | 13822 | 13625 | 13617 | 13605 | 13693 | 13610 | 13370 | 13332 | 13187 | 12948 | 12331 | 10624 | 8545 | 6926 | 5642 | 4731 | 4023 | 3473 | 2938 | 2364 | 2155 | 1763 | 1557 | 1290 | 1091 | 948 | 882 | 674 |
| a | a | 320756 | 128.1 | 49 | 5.4e-09 | 2.2e-08 | 7.66 | 2 | 714 | 807 | 947 | 1132 | 1254 | 1451 | 1786 | 2104 | 2381 | 2907 | 3400 | 3909 | 4833 | 5724 | 7065 | 8840 | 10729 | 12843 | 13052 | 12960 | 12610 | 12596 | 12518 | 12360 | 12453 | 12497 | 12402 | 12482 | 12685 | 12968 | 12772 | 12705 | 12423 | 10542 | 8722 | 6848 | 5513 | 4676 | 3902 | 3249 | 2802 | 2341 | 2029 | 1752 | 1463 | 1240 | 1096 | 837 | 772 | 663 |
| t | t | 319789 | 106.0 | 49 | 4.5e-06 | 1.8e-05 | 4.75 | 3 | 692 | 858 | 910 | 1017 | 1291 | 1498 | 1726 | 2085 | 2282 | 2783 | 3249 | 3877 | 4614 | 5415 | 6898 | 8772 | 10824 | 12422 | 12824 | 12686 | 12783 | 12590 | 12634 | 12547 | 12409 | 12433 | 12502 | 12560 | 12587 | 12521 | 12846 | 12919 | 12672 | 10610 | 8754 | 7122 | 5526 | 4636 | 3865 | 3338 | 2757 | 2308 | 2050 | 1774 | 1439 | 1284 | 1086 | 954 | 833 | 727 |
| g | g | 333654 | 89.5 | 49 | 3.7e-04 | 0.0015 | 2.83 | 4 | 674 | 789 | 930 | 1121 | 1311 | 1532 | 1880 | 2227 | 2608 | 2903 | 3519 | 4107 | 4849 | 5775 | 7197 | 8642 | 10817 | 12628 | 13063 | 13148 | 13347 | 13406 | 13027 | 13481 | 13522 | 13500 | 13499 | 13408 | 13427 | 13256 | 13248 | 13437 | 12852 | 10804 | 8715 | 7062 | 5685 | 4774 | 4001 | 3431 | 2875 | 2564 | 2226 | 1797 | 1583 | 1352 | 1120 | 1014 | 811 | 710 |
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