/var/www/html/rsat/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title S1 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	2616
	Sum of sequence lengths      	1315716
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	502
	Possible positions           	1313100
 Oligonucleotide statistics:
	Total occurrences    	1305428
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	1313100
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	153	2818
	2	-24	[-479,-460]	-469.5	174	3331
	3	-23	[-459,-440]	-449.5	202	3789
	4	-22	[-439,-420]	-429.5	236	4438
	5	-21	[-419,-400]	-409.5	285	5253
	6	-20	[-399,-380]	-389.5	325	6126
	7	-19	[-379,-360]	-369.5	391	7230
	8	-18	[-359,-340]	-349.5	456	8634
	9	-17	[-339,-320]	-329.5	530	9793
	10	-16	[-319,-300]	-309.5	634	11628
	11	-15	[-299,-280]	-289.5	732	13727
	12	-14	[-279,-260]	-269.5	878	16087
	13	-13	[-259,-240]	-249.5	1034	19113
	14	-12	[-239,-220]	-229.5	1253	22771
	15	-11	[-219,-200]	-209.5	1568	28466
	16	-10	[-199,-180]	-189.5	1948	35350
	17	-9	[-179,-160]	-169.5	2352	43358
	18	-8	[-159,-140]	-149.5	2616	50950
	19	-7	[-139,-120]	-129.5	2616	52320
	20	-6	[-119,-100]	-109.5	2616	52320
	21	-5	[-99,-80]	-89.5	2616	52320
	22	-4	[-79,-60]	-69.5	2616	52320
	23	-3	[-59,-40]	-49.5	2616	52320
	24	-2	[-39,-20]	-29.5	2616	52320
	25	-1	[-19,0]	-9.5	2616	52320
	26	0	[1,20]	10.5	2616	52320
	27	1	[21,40]	30.5	2616	52320
	28	2	[41,60]	50.5	2616	52320
	29	3	[61,80]	70.5	2616	52320
	30	4	[81,100]	90.5	2616	52320
	31	5	[101,120]	110.5	2616	52320
	32	6	[121,140]	130.5	2616	52320
	33	7	[141,160]	150.5	2616	50398
	34	8	[161,180]	170.5	2315	42569
	35	9	[181,200]	190.5	1919	34612
	36	10	[201,220]	210.5	1547	27828
	37	11	[221,240]	230.5	1233	22324
	38	12	[241,260]	250.5	1022	18804
	39	13	[261,280]	270.5	862	15798
	40	14	[281,300]	290.5	726	13536
	41	15	[301,320]	310.5	627	11420
	42	16	[321,340]	330.5	519	9643
	43	17	[341,360]	350.5	453	8500
	44	18	[361,380]	370.5	387	7097
	45	19	[381,400]	390.5	324	6039
	46	20	[401,420]	410.5	281	5158
	47	21	[421,440]	430.5	233	4364
	48	22	[441,460]	450.5	199	3729
	49	23	[461,480]	470.5	173	3297
	50	24	[481,500]	490.5	151	2642

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 91956 161.1 49 7.2e-14 1.1e-12 11.94 1 196 242 267 342 338 371 494 626 647 794 954 1096 1435 1694 2064 2571 3084 3789 3761 3809 3624 3571 3513 3410 3462 3552 3467 3528 3710 3807 3752 3697 3600 3089 2582 1948 1589 1350 1078 911 764 644 559 500 398 355 293 216 219 194
ta ta 53100 146.4 49 1.2e-11 2e-10 9.70 2 125 148 146 169 205 268 281 340 387 467 536 613 786 954 1165 1542 1827 2151 2258 2234 2118 2018 2009 1954 1974 1987 2026 2056 2018 2076 2104 2114 2138 1809 1522 1231 931 803 619 528 444 380 336 318 220 210 205 132 108 110
gc gc 103098 136.0 49 4.1e-10 6.5e-09 8.19 3 180 238 274 350 417 495 570 674 791 927 1085 1314 1480 1758 2207 2676 3289 3827 3997 4082 4148 4210 4245 4297 4256 4376 4419 4278 4097 4104 3987 4026 3808 3340 2571 2098 1765 1416 1190 1049 872 738 653 532 494 397 347 281 272 201
cg cg 81228 130.8 49 2.3e-09 3.6e-08 7.44 4 156 201 248 264 326 377 438 542 605 719 876 1027 1155 1390 1695 2083 2494 3095 3135 3250 3233 3299 3282 3429 3414 3460 3446 3400 3346 3226 3136 3154 2967 2619 2066 1640 1315 1156 912 815 729 574 525 420 405 320 281 239 181 163
tt tt 91786 121.2 49 4.8e-08 7.6e-07 6.12 5 211 248 303 275 382 426 501 572 636 829 879 1066 1266 1517 2024 2554 3195 3617 3669 3629 3689 3658 3634 3612 3488 3511 3535 3559 3620 3598 3710 3681 3718 3126 2561 2063 1555 1312 1142 974 765 644 583 472 407 343 289 299 238 201
cc cc 78731 119.9 49 7.1e-08 1.1e-06 5.95 6 175 203 237 259 323 399 439 526 567 694 793 981 1082 1329 1667 2126 2494 3007 3101 3063 3155 3192 3399 3286 3300 3271 3252 3221 3185 3136 3181 3022 2827 2442 1982 1584 1287 1084 944 862 710 554 524 424 337 286 233 238 207 141
at at 77204 114.3 49 3.9e-07 6.2e-06 5.21 7 173 200 227 245 283 370 440 485 524 674 820 985 1157 1350 1714 2216 2643 3060 3222 3096 3002 2939 2992 2968 2910 2993 2932 2927 3027 3027 3082 3157 3050 2523 2161 1789 1321 1076 925 783 702 578 513 422 366 314 295 202 184 160
ac ac 71700 101.6 49 1.5e-05 0.00024 3.62 8 164 192 248 285 325 353 375 487 572 701 803 865 1048 1253 1546 1949 2383 2956 2877 2893 2802 2911 2930 2840 2848 2793 2898 2837 2804 2896 2880 2693 2568 2290 1844 1411 1249 1043 894 723 628 496 444 379 323 268 251 190 174 118
gg gg 78004 93.8 49 1.2e-04 0.002 2.70 9 158 194 239 266 311 365 469 544 640 660 817 957 1115 1373 1736 1930 2539 2894 3036 3083 3139 3135 2938 3181 3117 3092 3117 3179 3197 3116 3214 3193 2972 2428 2023 1665 1336 1103 965 776 651 653 545 404 386 320 254 256 175 148
ca ca 94925 66.0 49 5.3e-02 0.85 0.07 10 219 246 268 353 402 465 544 589 712 923 1019 1136 1365 1647 2063 2582 3186 3751 3837 3775 3714 3807 3863 3867 3747 3815 3825 3778 3768 3887 3774 3669 3508 3029 2411 1967 1617 1321 1180 986 813 674 588 486 444 352 301 241 259 152
gt gt 71842 60.6 49 1.2e-01 2 -0.30 11 160 180 166 229 286 317 381 467 533 602 732 798 1013 1200 1497 1910 2379 2785 2826 2858 2910 2847 2791 2831 2911 2864 2860 2834 2907 2865 2900 2989 2871 2425 1913 1541 1233 1072 832 754 595 532 464 403 311 308 231 224 158 147
ga ga 79975 57.4 49 1.9e-01 3.1 -0.49 12 176 177 251 276 297 355 460 542 644 714 885 1038 1241 1443 1757 2125 2610 3121 3204 3124 3148 3214 3051 3172 3238 3168 3103 3115 3226 3170 3146 3229 3103 2495 2103 1679 1303 1149 986 826 721 632 544 436 386 312 275 241 197 167
ct ct 78403 56.8 49 2.1e-01 3.3 -0.52 13 168 207 229 272 331 384 397 541 618 676 837 1028 1157 1357 1691 2121 2610 2997 3068 3145 3161 3117 3278 3043 3155 3059 3170 3211 3070 3083 3095 3101 2966 2446 2008 1656 1379 1134 957 786 652 539 500 421 353 320 268 225 232 184
tg tg 94466 54.1 49 2.9e-01 4.6 -0.66 14 176 236 245 328 364 437 510 656 690 802 984 1189 1383 1567 2051 2511 3198 3619 3683 3661 3815 3785 3740 3750 3778 3753 3803 3696 3699 3647 3871 3937 3683 3052 2512 2018 1652 1329 1114 997 797 705 619 537 418 397 327 284 254 207
ag ag 79365 45.1 49 6.3e-01 10 -1.01 15 181 173 205 260 307 357 477 506 638 738 823 962 1191 1425 1739 2104 2619 3036 3190 3160 3182 3175 3083 3141 3232 3159 3104 3190 3144 3238 3058 3155 3153 2585 2052 1643 1301 1174 968 809 695 606 500 442 364 294 253 225 191 158
tc tc 79645 40.4 49 8.1e-01 13 -1.11 16 180 226 216 245 340 367 434 517 569 684 850 1009 1179 1377 1658 2165 2602 3035 3213 3161 3161 3129 3251 3231 3168 3182 3138 3248 3250 3198 3159 3186 3051 2482 2052 1707 1322 1137 947 810 724 562 495 429 387 325 256 231 228 172 
 Host name	rsat
 Job started	2026-01-25.181012
 Job done	2026-01-25.181020
 Seconds	8.36
	user	8.36
	system	0.01
	cuser	0
;	csystem	0