One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/dyads_m8/peak-motifs_dyads_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/dyads_m8/peak-motifs_dyads_m8_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: dyads_m8_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m8_shift0 (dyads_m8) |
 |
|
|
; dyads_m8; m=0 (reference); ncol1=14; shift=0; ncol=14; aaAAAAaaAAAAaa
; Alignment reference
a 1899 2016 4485 4686 4719 4562 2114 2094 4517 4701 4638 4429 2025 2008
c 1094 1124 243 175 173 200 1052 1157 234 157 199 252 1002 1057
g 1067 1059 234 141 99 155 912 992 219 140 146 202 963 977
t 1101 962 199 159 170 244 1083 918 191 163 178 278 1171 1119
|
| hb_shift5 (hb) |
 |
|
|
; dyads_m8 versus hb; m=1/1; ncol2=9; w=0; offset=5; strand=D; shift=5; score=0.50691; -----mayAAAAAa
; cor=; Ncor=
a 0 0 0 0 0 30.2913 47.4563 1.00971 96.932 101.981 104 97.9417 102.99 68.6602
c 0 0 0 0 0 49.4757 16.1553 29.2816 1.00971 1.00971 0 1.00971 1.00971 8.07767
g 0 0 0 0 0 21.2039 17.165 11.1068 4.03883 0 0 4.03883 0 12.1165
t 0 0 0 0 0 3.02913 23.2233 62.6019 2.01942 1.00971 0 1.00971 0 15.1456
|