One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/oligos_6-8nt_m10/peak-motifs_oligos_6-8nt_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/oligos_6-8nt_m10/peak-motifs_oligos_6-8nt_m10_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: oligos_6-8nt_m10_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6-8nt_m10_shift0 (oligos_6-8nt_m10) |
 |
|
|
; oligos_6-8nt_m10; m=0 (reference); ncol1=10; shift=0; ncol=10; smCAAGGAgm
; Alignment reference
a 257 283 0 1090 1115 0 0 1114 212 318
c 298 337 1103 1 1 0 0 0 223 316
g 316 253 1 7 2 1118 1112 3 419 279
t 247 245 14 20 0 0 6 1 264 205
|
| ttk_rc_shift3 (ttk_rc) |
 |
|
|
; oligos_6-8nt_m10 versus ttk_rc; m=1/2; ncol2=7; w=0; offset=3; strand=R; shift=3; score=0.568452; ---mAGGAym
; cor=; Ncor=
a 0 0 0 3.375 7.875 0 0 9 0 3.375
c 0 0 0 5.625 0 0 0 0 5.625 5.625
g 0 0 0 0 1.125 9 9 0 0 0
t 0 0 0 0 0 0 0 0 3.375 0
|
| Eip74EF_shift3 (Eip74EF) |
 |
|
|
; oligos_6-8nt_m10 versus Eip74EF; m=2/2; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.451607; ---mMGGAAk
; cor=; Ncor=
a 0 0 0 3 6 1 0 8 8 1
c 0 0 0 5 2 0 1 0 0 0
g 0 0 0 0 0 7 7 0 0 5
t 0 0 0 0 0 0 0 0 0 2
|