One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/oligos_6-8nt_m3/peak-motifs_oligos_6-8nt_m3_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: oligos_6-8nt_m3_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6-8nt_m3_shift0 (oligos_6-8nt_m3) |
 |
|
|
; oligos_6-8nt_m3; m=0 (reference); ncol1=11; shift=0; ncol=11; mmAACACAAmh
; Alignment reference
a 949 1129 2938 3059 158 3134 181 2999 2977 1051 889
c 973 884 251 176 2965 128 2938 207 224 880 938
g 723 818 114 116 111 72 190 134 123 712 756
t 807 621 149 101 218 118 143 112 128 809 869
|
| eve_shift4 (eve) |
 |
|
|
; oligos_6-8nt_m3 versus eve; m=1/1; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.425082; ----mACaaTw
; cor=; Ncor=
a 0 0 0 0 8 18 1 13 13 0 9
c 0 0 0 0 9 0 16 3 0 1 1
g 0 0 0 0 3 2 0 4 3 0 1
t 0 0 0 0 0 0 3 0 4 19 9
|