One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/oligos_6-8nt_m4/peak-motifs_oligos_6-8nt_m4_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: oligos_6-8nt_m4_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6-8nt_m4_shift0 (oligos_6-8nt_m4) |
 |
|
|
; oligos_6-8nt_m4; m=0 (reference); ncol1=10; shift=0; ncol=10; wrTAyATAya
; Alignment reference
a 607 949 20 2377 126 1841 4 2324 446 933
c 502 392 33 21 1426 149 26 27 617 437
g 435 630 16 0 211 229 55 21 360 449
t 855 428 2330 1 636 180 2314 27 976 580
|
| Antp_shift4 (Antp) |
 |
|
|
; oligos_6-8nt_m4 versus Antp; m=1/1; ncol2=6; w=0; offset=4; strand=D; shift=4; score=0.424092; ----mATAAw
; cor=; Ncor=
a 0 0 0 0 10.5 18 0 16.5 18 7.5
c 0 0 0 0 4.5 0 0 0 0 0
g 0 0 0 0 3 0 0 1.5 0 0
t 0 0 0 0 0 0 18 0 0 10.5
|