One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/oligos_6-8nt_m8/peak-motifs_oligos_6-8nt_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/oligos_6-8nt_m8/peak-motifs_oligos_6-8nt_m8_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: oligos_6-8nt_m8_shift1 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6-8nt_m8_shift1 (oligos_6-8nt_m8) |
 |
|
|
; oligos_6-8nt_m8; m=0 (reference); ncol1=11; shift=1; ncol=12; -cbCTCTCCCtc
; Alignment reference
a 0 771 701 108 155 94 158 79 156 194 1015 646
c 0 1663 1103 3887 116 3844 138 3643 3109 3671 904 1769
g 0 795 1185 74 218 132 245 288 360 206 912 914
t 0 999 1239 159 3739 158 3687 218 603 157 1397 899
|
| Trl_shift0 (Trl) |
 |
|
|
; oligos_6-8nt_m8 versus Trl; m=1/1; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.652055; TtkykCTCtCtc
; cor=; Ncor=
a 10 15 4 0 7 0 4 2 6 13 9 4
c 10 8 19 41 3 72 0 56 12 56 16 47
g 0 13 24 10 27 5 11 8 9 1 6 9
t 57 41 30 26 40 0 62 11 50 7 46 17
|