compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file2 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files prefix $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_disco_compa match_table_html $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_disco_compa.html alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab html_index $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html match_table_txt $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html Matrices file1 23 matrices $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 10 2374 file1 2 10 644 file1 3 10 817 file1 4 13 2388 file1 5 11 1621 file1 6 11 3452 file1 7 10 2399 file1 8 12 2129 file1 9 10 938 file1 10 12 3588 file1 11 11 4228 ... 13 more matrices file2 23 matrices $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 10 2374 file2 2 10 644 file2 3 10 817 file2 4 13 2388 file2 5 11 1621 file2 6 11 3452 file2 7 10 2399 file2 8 12 2129 file2 9 10 938 file2 10 12 3588 file2 11 11 4228 ... 13 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6-8nt_m7 | oligos_6-8nt_m7 | oligos_6-8nt_m7 | oligos_6-8nt_m7 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m6 | oligos_6-8nt_m6 | oligos_6-8nt_m6 | oligos_6-8nt_m6 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m4 | dyads_m4 | dyads_m4 | dyads_m4 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m8 | oligos_6-8nt_m8 | oligos_6-8nt_m8 | oligos_6-8nt_m8 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m1 | positions_6-8nt_m1 | positions_6-8nt_m1 | positions_6-8nt_m1 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m2 | oligos_6-8nt_m2 | oligos_6-8nt_m2 | oligos_6-8nt_m2 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m1 | dyads_m1 | dyads_m1 | dyads_m1 | 1.000 | 1.000 | 20 | 20 | 20 | 20 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m9 | dyads_m9 | dyads_m9 | dyads_m9 | 1.000 | 1.000 | 23 | 23 | 23 | 23 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m9 | oligos_6-8nt_m9 | oligos_6-8nt_m9 | oligos_6-8nt_m9 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m6 | dyads_m6 | dyads_m6 | dyads_m6 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m5 | dyads_m5 | dyads_m5 | dyads_m5 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m8 | dyads_m8 | dyads_m8 | dyads_m8 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m3 | positions_6-8nt_m3 | positions_6-8nt_m3 | positions_6-8nt_m3 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m1 | oligos_6-8nt_m1 | oligos_6-8nt_m1 | oligos_6-8nt_m1 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m2 | dyads_m2 | dyads_m2 | dyads_m2 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m5 | oligos_6-8nt_m5 | oligos_6-8nt_m5 | oligos_6-8nt_m5 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m3 | dyads_m3 | dyads_m3 | dyads_m3 | 1.000 | 1.000 | 18 | 18 | 18 | 18 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m4 | oligos_6-8nt_m4 | oligos_6-8nt_m4 | oligos_6-8nt_m4 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m10 | oligos_6-8nt_m10 | oligos_6-8nt_m10 | oligos_6-8nt_m10 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m2 | positions_6-8nt_m2 | positions_6-8nt_m2 | positions_6-8nt_m2 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m10 | dyads_m10 | dyads_m10 | dyads_m10 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m7 | dyads_m7 | dyads_m7 | dyads_m7 | 1.000 | 1.000 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m3 | oligos_6-8nt_m3 | oligos_6-8nt_m3 | oligos_6-8nt_m3 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m5 | dyads_m4 | dyads_m5 | dyads_m4 | 0.831 | 0.831 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m4 | dyads_m5 | dyads_m4 | dyads_m5 | 0.831 | 0.831 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m5 | dyads_m2 | oligos_6-8nt_m5 | dyads_m2 | 0.898 | 0.770 | 12 | 14 | 12 | 14 | 0.8571 | 1.0000 | 0.8571 | D | -1 |
| dyads_m2 | oligos_6-8nt_m5 | dyads_m2 | oligos_6-8nt_m5 | 0.898 | 0.770 | 14 | 12 | 12 | 14 | 0.8571 | 0.8571 | 1.0000 | D | 1 |
| dyads_m9 | dyads_m3 | dyads_m9 | dyads_m3 | 0.916 | 0.717 | 23 | 18 | 18 | 23 | 0.7826 | 0.7826 | 1.0000 | R | 0 |
| dyads_m3 | dyads_m9 | dyads_m3 | dyads_m9 | 0.916 | 0.717 | 18 | 23 | 18 | 23 | 0.7826 | 1.0000 | 0.7826 | R | -5 |
| oligos_6-8nt_m9 | oligos_6-8nt_m8 | oligos_6-8nt_m9 | oligos_6-8nt_m8 | 0.709 | 0.709 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m8 | oligos_6-8nt_m9 | oligos_6-8nt_m8 | oligos_6-8nt_m9 | 0.709 | 0.709 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m1 | dyads_m10 | oligos_6-8nt_m1 | dyads_m10 | 0.732 | 0.676 | 13 | 12 | 12 | 13 | 0.9231 | 0.9231 | 1.0000 | D | 0 |
| dyads_m10 | oligos_6-8nt_m1 | dyads_m10 | oligos_6-8nt_m1 | 0.732 | 0.676 | 12 | 13 | 12 | 13 | 0.9231 | 1.0000 | 0.9231 | D | 0 |
| dyads_m6 | dyads_m4 | dyads_m6 | dyads_m4 | 0.725 | 0.659 | 10 | 11 | 10 | 11 | 0.9091 | 1.0000 | 0.9091 | D | 0 |
| dyads_m4 | dyads_m6 | dyads_m4 | dyads_m6 | 0.725 | 0.659 | 11 | 10 | 10 | 11 | 0.9091 | 0.9091 | 1.0000 | D | 0 |
| dyads_m7 | oligos_6-8nt_m7 | dyads_m7 | oligos_6-8nt_m7 | 0.820 | 0.656 | 15 | 12 | 12 | 15 | 0.8000 | 0.8000 | 1.0000 | D | 1 |
| oligos_6-8nt_m7 | dyads_m7 | oligos_6-8nt_m7 | dyads_m7 | 0.820 | 0.656 | 12 | 15 | 12 | 15 | 0.8000 | 1.0000 | 0.8000 | D | -1 |
| oligos_6-8nt_m4 | dyads_m10 | oligos_6-8nt_m4 | dyads_m10 | 0.746 | 0.622 | 10 | 12 | 10 | 12 | 0.8333 | 1.0000 | 0.8333 | D | -1 |
| dyads_m10 | oligos_6-8nt_m4 | dyads_m10 | oligos_6-8nt_m4 | 0.746 | 0.622 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | D | 1 |
| positions_6-8nt_m1 | dyads_m10 | positions_6-8nt_m1 | dyads_m10 | 0.709 | 0.591 | 10 | 12 | 10 | 12 | 0.8333 | 1.0000 | 0.8333 | D | -2 |
| dyads_m10 | positions_6-8nt_m1 | dyads_m10 | positions_6-8nt_m1 | 0.709 | 0.591 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | D | 2 |
| positions_6-8nt_m1 | dyads_m8 | positions_6-8nt_m1 | dyads_m8 | 0.821 | 0.586 | 10 | 14 | 10 | 14 | 0.7143 | 1.0000 | 0.7143 | D | 0 |
| dyads_m8 | positions_6-8nt_m1 | dyads_m8 | positions_6-8nt_m1 | 0.821 | 0.586 | 14 | 10 | 10 | 14 | 0.7143 | 0.7143 | 1.0000 | D | 0 |
| positions_6-8nt_m2 | oligos_6-8nt_m9 | positions_6-8nt_m2 | oligos_6-8nt_m9 | 0.778 | 0.584 | 10 | 11 | 9 | 12 | 0.7500 | 0.9000 | 0.8182 | R | -2 |
| oligos_6-8nt_m9 | positions_6-8nt_m2 | oligos_6-8nt_m9 | positions_6-8nt_m2 | 0.778 | 0.584 | 11 | 10 | 9 | 12 | 0.7500 | 0.8182 | 0.9000 | R | -1 |
| positions_6-8nt_m1 | oligos_6-8nt_m1 | positions_6-8nt_m1 | oligos_6-8nt_m1 | 0.742 | 0.570 | 10 | 13 | 10 | 13 | 0.7692 | 1.0000 | 0.7692 | D | -3 |
| oligos_6-8nt_m1 | positions_6-8nt_m1 | oligos_6-8nt_m1 | positions_6-8nt_m1 | 0.742 | 0.570 | 13 | 10 | 10 | 13 | 0.7692 | 0.7692 | 1.0000 | D | 3 |
| oligos_6-8nt_m1 | dyads_m8 | oligos_6-8nt_m1 | dyads_m8 | 0.707 | 0.566 | 13 | 14 | 12 | 15 | 0.8000 | 0.9231 | 0.8571 | D | 1 |
| dyads_m8 | oligos_6-8nt_m1 | dyads_m8 | oligos_6-8nt_m1 | 0.707 | 0.566 | 14 | 13 | 12 | 15 | 0.8000 | 0.8571 | 0.9231 | D | -1 |
| dyads_m1 | oligos_6-8nt_m7 | dyads_m1 | oligos_6-8nt_m7 | 0.860 | 0.516 | 20 | 12 | 12 | 20 | 0.6000 | 0.6000 | 1.0000 | D | 2 |
| oligos_6-8nt_m7 | dyads_m1 | oligos_6-8nt_m7 | dyads_m1 | 0.860 | 0.516 | 12 | 20 | 12 | 20 | 0.6000 | 1.0000 | 0.6000 | D | -2 |
| oligos_6-8nt_m8 | positions_6-8nt_m2 | oligos_6-8nt_m8 | positions_6-8nt_m2 | 0.739 | 0.455 | 11 | 10 | 8 | 13 | 0.6154 | 0.7273 | 0.8000 | R | 3 |
| positions_6-8nt_m2 | oligos_6-8nt_m8 | positions_6-8nt_m2 | oligos_6-8nt_m8 | 0.739 | 0.455 | 10 | 11 | 8 | 13 | 0.6154 | 0.8000 | 0.7273 | R | 2 |
Host name rsat Job started 2026-01-25.181257 Job done 2026-01-25.181314 Seconds 1.82 user 1.82 system 0.75 cuser 13.33 ; csystem 1.8