One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/positions_6-8nt_m2/peak-motifs_positions_6-8nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/positions_6-8nt_m2/peak-motifs_positions_6-8nt_m2_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: positions_6-8nt_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| positions_6-8nt_m2_shift0 (positions_6-8nt_m2) |
 |
|
|
; positions_6-8nt_m2; m=0 (reference); ncol1=10; shift=0; ncol=10; krGAGGGAda
; Alignment reference
a 150 203 5 633 0 1 0 626 167 221
c 135 152 2 0 3 0 0 0 110 131
g 192 161 599 7 641 641 594 5 206 151
t 167 128 38 4 0 2 50 13 161 141
|
| z_shift1 (z) |
 |
|
|
; positions_6-8nt_m2 versus z; m=1/1; ncol2=6; w=0; offset=1; strand=D; shift=1; score=0.429498; -TGAGtG---
; cor=; Ncor=
a 0 2.04878 0 42 0 7.17073 1.02439 0 0 0
c 0 7.17073 0 0 0 10.2439 5.12195 0 0 0
g 0 3.07317 42 0 42 0 30.7317 0 0 0
t 0 29.7073 0 0 0 24.5854 5.12195 0 0 0
|