/var/www/html/rsat/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.html
 Matrices
	file1	23 matrices	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181000_2026-01-25.181000_CpuIe4/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	10	2374
		file1	2	10	644
		file1	3	10	817
		file1	4	13	2388
		file1	5	11	1621
		file1	6	11	3452
		file1	7	10	2399
		file1	8	12	2129
		file1	9	10	938
		file1	10	12	3588
		file1	11	11	4228
		...	13 more matrices
	file2	41 matrices	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
		file2		1		6		45.00005
		file2		2		6		18
		file2		3		6		14
		file2		4		8		49.00004
		file2		5		8		18.00005
		file2		6		7		21
		file2		7		11		16
		file2		8		8		8
		file2		9		7		11
		file2		10		8		10
		file2		11		9		13
		...	31 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_6-8nt_m1 hb positions_6-8nt_m1 hb 0.815 0.733 10 9 9 10 0.9000 0.9000 1.0000 D 0
oligos_6-8nt_m8 Trl oligos_6-8nt_m8 Trl 0.771 0.652 11 13 11 13 0.8462 1.0000 0.8462 D -1
oligos_6-8nt_m9 Trl oligos_6-8nt_m9 Trl 0.769 0.651 11 13 11 13 0.8462 1.0000 0.8462 D -1
oligos_6-8nt_m10 ttk oligos_6-8nt_m10 ttk 0.812 0.568 10 7 7 10 0.7000 0.7000 1.0000 R 3
dyads_m10 hb dyads_m10 hb 0.746 0.559 12 9 9 12 0.7500 0.7500 1.0000 D 1
oligos_6-8nt_m6 z oligos_6-8nt_m6 z 0.892 0.535 10 6 6 10 0.6000 0.6000 1.0000 R 1
dyads_m10 br-Z4 dyads_m10 br-Z4 0.778 0.519 12 8 8 12 0.6667 0.6667 1.0000 R 3
oligos_6-8nt_m1 hb oligos_6-8nt_m1 hb 0.741 0.513 13 9 9 13 0.6923 0.6923 1.0000 D 1
dyads_m8 hb dyads_m8 hb 0.789 0.507 14 9 9 14 0.6429 0.6429 1.0000 D 5
dyads_m5 Med dyads_m5 Med 0.704 0.488 11 11 9 13 0.6923 0.8182 0.8182 D 2
dyads_m10 Antp dyads_m10 Antp 0.940 0.470 12 6 6 12 0.5000 0.5000 1.0000 D 5
dyads_m5 brk dyads_m5 brk 0.732 0.466 11 7 7 11 0.6364 0.6364 1.0000 D 2
dyads_m10 zen dyads_m10 zen 0.912 0.456 12 6 6 12 0.5000 0.5000 1.0000 D 1
oligos_6-8nt_m10 Eip74EF oligos_6-8nt_m10 Eip74EF 0.710 0.452 10 8 7 11 0.6364 0.7000 0.8750 D 3
positions_6-8nt_m1 zen positions_6-8nt_m1 zen 0.747 0.448 10 6 6 10 0.6000 0.6000 1.0000 D 2
dyads_m10 ap dyads_m10 ap 0.875 0.438 12 6 6 12 0.5000 0.5000 1.0000 D 5
positions_6-8nt_m2 z positions_6-8nt_m2 z 0.716 0.429 10 6 6 10 0.6000 0.6000 1.0000 D 1
oligos_6-8nt_m9 z oligos_6-8nt_m9 z 0.783 0.427 11 6 6 11 0.5455 0.5455 1.0000 R 4
oligos_6-8nt_m3 eve oligos_6-8nt_m3 eve 0.729 0.425 11 8 7 12 0.5833 0.6364 0.8750 D 4
dyads_m10 abd-A dyads_m10 abd-A 0.850 0.425 12 6 6 12 0.5000 0.5000 1.0000 D 6
oligos_6-8nt_m4 Antp oligos_6-8nt_m4 Antp 0.707 0.424 10 6 6 10 0.6000 0.6000 1.0000 D 4
positions_6-8nt_m1 cad positions_6-8nt_m1 cad 0.715 0.417 10 9 7 12 0.5833 0.7000 0.7778 R -2
positions_6-8nt_m1 gt positions_6-8nt_m1 gt 0.751 0.410 10 7 6 11 0.5455 0.6000 0.8571 D -1 
 Host name	rsat
 Job started	2026-01-25.181329
 Job done	2026-01-25.181336
 Seconds	0.84
	user	0.84
	system	0.24
	cuser	5
;	csystem	0.84