position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title S2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 3920 Sum of sequence lengths 2594017 Min sequence length 0 Max sequence length 1000 Average sequence length 661 Possible positions 2594017 Oligonucleotide statistics: Total occurrences 2586546 Position interval parameters: Position interval 20 Number of windows 50 Total positions 2594017 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 1007 19615 2 -24 [-479,-460] -469.5 1090 21013 3 -23 [-459,-440] -449.5 1171 22646 4 -22 [-439,-420] -429.5 1256 24361 5 -21 [-419,-400] -409.5 1354 26175 6 -20 [-399,-380] -389.5 1456 28089 7 -19 [-379,-360] -369.5 1573 30369 8 -18 [-359,-340] -349.5 1690 32659 9 -17 [-339,-320] -329.5 1835 35290 10 -16 [-319,-300] -309.5 1995 38326 11 -15 [-299,-280] -289.5 2159 41644 12 -14 [-279,-260] -269.5 2378 45608 13 -13 [-259,-240] -249.5 2606 50103 14 -12 [-239,-220] -229.5 2862 54771 15 -11 [-219,-200] -209.5 3153 60309 16 -10 [-199,-180] -189.5 3489 66709 17 -9 [-179,-160] -169.5 3856 73672 18 -8 [-159,-140] -149.5 3920 78347 19 -7 [-139,-120] -129.5 3920 78400 20 -6 [-119,-100] -109.5 3920 78400 21 -5 [-99,-80] -89.5 3920 78400 22 -4 [-79,-60] -69.5 3920 78400 23 -3 [-59,-40] -49.5 3920 78400 24 -2 [-39,-20] -29.5 3920 78400 25 -1 [-19,0] -9.5 3920 78400 26 0 [1,20] 10.5 3920 78400 27 1 [21,40] 30.5 3920 78400 28 2 [41,60] 50.5 3920 78400 29 3 [61,80] 70.5 3920 78400 30 4 [81,100] 90.5 3920 78400 31 5 [101,120] 110.5 3920 78400 32 6 [121,140] 130.5 3920 78400 33 7 [141,160] 150.5 3920 78286 34 8 [161,180] 170.5 3837 73317 35 9 [181,200] 190.5 3471 66366 36 10 [201,220] 210.5 3138 60011 37 11 [221,240] 230.5 2845 54502 38 12 [241,260] 250.5 2594 49864 39 13 [261,280] 270.5 2370 45389 40 14 [281,300] 290.5 2152 41489 41 15 [301,320] 310.5 1983 38185 42 16 [321,340] 330.5 1827 35145 43 17 [341,360] 350.5 1681 32539 44 18 [361,380] 370.5 1567 30246 45 19 [381,400] 390.5 1449 27977 46 20 [401,420] 410.5 1348 26076 47 21 [421,440] 430.5 1251 24281 48 22 [441,460] 450.5 1168 22558 49 23 [461,480] 470.5 1081 20922 50 24 [481,500] 490.5 1002 19558 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 692242 | 65.7 | 49 | 5.6e-02 | 0.22 | 0.65 | 1 | 5263 | 5759 | 6019 | 6545 | 6961 | 7423 | 8226 | 8680 | 9416 | 10170 | 11173 | 12256 | 13443 | 14628 | 16162 | 17848 | 19882 | 20514 | 20749 | 20821 | 20807 | 20780 | 20796 | 20929 | 20924 | 21047 | 20962 | 20594 | 20528 | 20776 | 20778 | 20873 | 20694 | 19576 | 17849 | 15999 | 14697 | 13282 | 12126 | 11205 | 10188 | 9495 | 8864 | 8113 | 7528 | 7128 | 6638 | 6182 | 5674 | 5272 |
| c | c | 601533 | 56.6 | 49 | 2.1e-01 | 0.85 | 0.07 | 2 | 4656 | 4759 | 5193 | 5655 | 5992 | 6465 | 7053 | 7606 | 8178 | 8849 | 9571 | 10438 | 11463 | 12494 | 13932 | 15614 | 16992 | 18393 | 18327 | 18358 | 18228 | 18317 | 18375 | 18246 | 18190 | 18078 | 18192 | 18262 | 18401 | 18316 | 18447 | 18472 | 18182 | 16998 | 15129 | 13803 | 12506 | 11450 | 10448 | 9470 | 8814 | 8122 | 7547 | 7088 | 6481 | 6004 | 5505 | 5165 | 4796 | 4513 |
| t | t | 692827 | 52.5 | 49 | 3.4e-01 | 1.4 | -0.13 | 3 | 5145 | 5567 | 6078 | 6566 | 7145 | 7648 | 8083 | 8759 | 9615 | 10411 | 11159 | 12277 | 13521 | 14677 | 16076 | 17713 | 19587 | 21036 | 21084 | 20596 | 21168 | 20918 | 20740 | 20776 | 20896 | 20721 | 20890 | 20925 | 21089 | 20806 | 20791 | 20882 | 20887 | 19662 | 17762 | 16031 | 14373 | 13374 | 12123 | 11081 | 10206 | 9341 | 8632 | 8026 | 7526 | 6792 | 6618 | 6083 | 5636 | 5329 |
| g | g | 599944 | 52.1 | 49 | 3.5e-01 | 1.4 | -0.15 | 4 | 4531 | 4908 | 5323 | 5555 | 6048 | 6513 | 6970 | 7584 | 8041 | 8844 | 9698 | 10590 | 11577 | 12852 | 14019 | 15381 | 16985 | 18155 | 18025 | 18414 | 17945 | 18125 | 18216 | 18214 | 18156 | 18316 | 18131 | 18343 | 18074 | 18197 | 18110 | 17942 | 18276 | 16857 | 15448 | 13992 | 12705 | 11557 | 10534 | 9606 | 8829 | 8010 | 7344 | 6883 | 6328 | 6072 | 5440 | 5080 | 4777 | 4424 |
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