/var/www/html/rsat/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title S2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	3920
	Sum of sequence lengths      	2594017
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	661
	Possible positions           	2590097
 Oligonucleotide statistics:
	Total occurrences    	2582553
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	2590097
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	1007	19615
	2	-24	[-479,-460]	-469.5	1090	21013
	3	-23	[-459,-440]	-449.5	1171	22646
	4	-22	[-439,-420]	-429.5	1256	24361
	5	-21	[-419,-400]	-409.5	1354	26175
	6	-20	[-399,-380]	-389.5	1456	28089
	7	-19	[-379,-360]	-369.5	1573	30369
	8	-18	[-359,-340]	-349.5	1690	32659
	9	-17	[-339,-320]	-329.5	1835	35290
	10	-16	[-319,-300]	-309.5	1995	38326
	11	-15	[-299,-280]	-289.5	2159	41644
	12	-14	[-279,-260]	-269.5	2378	45608
	13	-13	[-259,-240]	-249.5	2606	50103
	14	-12	[-239,-220]	-229.5	2862	54771
	15	-11	[-219,-200]	-209.5	3153	60309
	16	-10	[-199,-180]	-189.5	3489	66709
	17	-9	[-179,-160]	-169.5	3856	73672
	18	-8	[-159,-140]	-149.5	3920	78347
	19	-7	[-139,-120]	-129.5	3920	78400
	20	-6	[-119,-100]	-109.5	3920	78400
	21	-5	[-99,-80]	-89.5	3920	78400
	22	-4	[-79,-60]	-69.5	3920	78400
	23	-3	[-59,-40]	-49.5	3920	78400
	24	-2	[-39,-20]	-29.5	3920	78400
	25	-1	[-19,0]	-9.5	3920	78400
	26	0	[1,20]	10.5	3920	78400
	27	1	[21,40]	30.5	3920	78400
	28	2	[41,60]	50.5	3920	78400
	29	3	[61,80]	70.5	3920	78400
	30	4	[81,100]	90.5	3920	78400
	31	5	[101,120]	110.5	3920	78400
	32	6	[121,140]	130.5	3920	78400
	33	7	[141,160]	150.5	3920	78203
	34	8	[161,180]	170.5	3832	72951
	35	9	[181,200]	190.5	3460	66033
	36	10	[201,220]	210.5	3130	59718
	37	11	[221,240]	230.5	2842	54251
	38	12	[241,260]	250.5	2592	49640
	39	13	[261,280]	270.5	2364	45171
	40	14	[281,300]	290.5	2147	41320
	41	15	[301,320]	310.5	1979	38029
	42	16	[321,340]	330.5	1824	34999
	43	17	[341,360]	350.5	1679	32425
	44	18	[361,380]	370.5	1562	30128
	45	19	[381,400]	390.5	1444	27876
	46	20	[401,420]	410.5	1346	25979
	47	21	[421,440]	430.5	1248	24198
	48	22	[441,460]	450.5	1166	22471
	49	23	[461,480]	470.5	1079	20843
	50	24	[481,500]	490.5	1000	18556

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 228195 116.3 49 2.2e-07 3.5e-06 5.46 1 1736 1902 2014 2179 2292 2449 2753 2849 3089 3388 3711 3996 4514 4843 5359 5922 6511 6725 6728 6873 6813 6866 6757 6895 6831 6867 7035 6646 6664 6738 6880 6863 6768 6414 5907 5262 4863 4321 4009 3735 3316 3211 3052 2710 2522 2507 2269 2042 1919 1680
cc cc 131951 107.5 49 2.9e-06 4.6e-05 4.34 2 1050 958 1084 1248 1289 1435 1504 1666 1729 1905 2081 2198 2472 2650 3057 3333 3670 4079 4075 4013 4095 3965 4015 4008 4055 3868 3942 3931 4167 4010 4205 4201 4045 3794 3351 3048 2760 2465 2290 2128 1918 1784 1729 1627 1427 1358 1170 1119 1031 949
tt tt 228313 94.4 49 1.1e-04 0.0017 2.77 3 1587 1787 2006 2204 2379 2587 2702 2957 3235 3512 3664 3976 4525 4840 5391 5838 6467 6972 6915 6593 7063 6898 6825 6682 6927 6731 6811 6903 7004 6919 6993 7004 6880 6350 5804 5278 4632 4375 4068 3591 3360 3096 2846 2667 2513 2219 2214 1965 1893 1665
gg gg 131000 62.1 49 9.9e-02 1.6 -0.20 4 1046 1048 1169 1223 1349 1478 1531 1683 1759 1915 2147 2288 2541 2841 3116 3448 3747 3955 3979 4027 3893 3921 3975 3913 4068 4028 3951 4012 3902 3972 4002 3844 3976 3654 3387 3082 2790 2496 2335 2032 1926 1758 1560 1522 1357 1320 1126 1055 988 865
ta ta 133067 59.8 49 1.4e-01 2.2 -0.35 5 1025 1081 1152 1224 1396 1463 1552 1699 1869 1996 2185 2409 2596 2876 3028 3368 3812 3994 4132 3927 4080 3946 3891 4045 4093 4076 3940 4024 3910 3927 3961 3867 3941 3805 3408 3093 2846 2593 2321 2173 1989 1814 1682 1554 1446 1281 1283 1227 1065 1002
at at 173691 59.2 49 1.5e-01 2.4 -0.39 6 1325 1426 1504 1681 1793 1910 2014 2181 2456 2554 2755 3175 3325 3678 3996 4440 4974 5192 5173 5248 5338 5237 5115 5315 5369 5243 5242 5171 5194 5163 5122 5202 5175 5021 4525 3960 3727 3402 2973 2834 2560 2386 2210 1954 1848 1691 1707 1586 1366 1255
tc tc 150157 57.9 49 1.8e-01 2.9 -0.46 7 1194 1199 1307 1441 1532 1680 1738 1880 2111 2213 2381 2703 2878 3124 3431 3966 4186 4671 4560 4574 4596 4588 4589 4526 4491 4533 4652 4584 4714 4567 4494 4602 4537 4274 3750 3356 3013 2789 2522 2387 2193 2017 1858 1746 1610 1428 1419 1289 1157 1107
ct ct 145631 53.9 49 2.9e-01 4.7 -0.67 8 1171 1195 1280 1362 1468 1581 1720 1825 2021 2126 2355 2597 2851 3035 3366 3843 4167 4495 4543 4400 4497 4406 4395 4436 4274 4408 4434 4423 4519 4400 4347 4366 4400 4189 3560 3388 2974 2786 2507 2235 2102 1914 1729 1707 1624 1392 1333 1241 1188 1056
ac ac 143481 52.3 49 3.5e-01 5.6 -0.75 9 1091 1198 1242 1316 1443 1509 1737 1852 1920 2092 2348 2454 2782 2982 3417 3781 4195 4242 4413 4365 4365 4294 4465 4271 4371 4380 4254 4281 4221 4359 4409 4423 4269 4013 3602 3304 2966 2723 2506 2216 2138 1953 1776 1746 1602 1381 1325 1298 1162 1029
cg cg 141987 49.8 49 4.4e-01 7 -0.85 10 1035 1138 1256 1308 1413 1542 1634 1832 1957 2125 2242 2478 2729 3084 3259 3718 3950 4381 4213 4474 4300 4413 4375 4290 4364 4327 4320 4401 4245 4290 4388 4337 4329 3896 3587 3237 2947 2707 2431 2233 2070 1934 1769 1612 1496 1390 1301 1171 1087 972
gc gc 174957 46.7 49 5.7e-01 9.1 -0.96 11 1297 1421 1574 1637 1732 1844 2081 2212 2387 2634 2799 3037 3351 3693 4053 4481 4971 5387 5280 5400 5244 5371 5352 5414 5296 5322 5283 5456 5340 5375 5322 5238 5336 4831 4356 4010 3708 3431 3054 2689 2571 2307 2175 1949 1838 1776 1557 1465 1402 1218
ga ga 148634 46.1 49 5.9e-01 9.5 -0.98 12 1122 1272 1294 1363 1449 1607 1698 1880 1962 2092 2365 2669 2898 3186 3520 3802 4236 4443 4405 4560 4540 4492 4536 4504 4483 4608 4472 4450 4442 4540 4412 4568 4603 4234 3868 3478 3153 2835 2571 2454 2134 1981 1806 1676 1605 1496 1383 1279 1193 1015
ag ag 146035 39.6 49 8.3e-01 13 -1.12 13 1111 1233 1259 1369 1432 1555 1722 1798 1951 2136 2359 2629 2822 3125 3389 3703 4201 4355 4434 4334 4290 4383 4458 4448 4352 4557 4430 4495 4447 4516 4367 4384 4462 4062 3739 3410 3081 2793 2602 2378 2148 1921 1808 1675 1541 1528 1321 1242 1216 1064
gt gt 144318 36.2 49 9.1e-01 15 -1.16 14 1066 1167 1286 1332 1518 1584 1660 1809 1933 2203 2387 2596 2787 3132 3329 3649 4031 4370 4360 4426 4266 4341 4353 4383 4307 4357 4423 4423 4389 4310 4374 4292 4344 4039 3755 3354 2990 2733 2508 2378 2153 1931 1763 1704 1501 1451 1352 1263 1164 1092
ca ca 181088 34.2 49 9.5e-01 15 -1.18 15 1400 1468 1572 1737 1821 1907 2195 2282 2471 2692 2893 3165 3411 3725 4250 4718 5205 5435 5496 5471 5335 5533 5590 5512 5496 5475 5496 5506 5470 5614 5507 5565 5384 5030 4568 4069 3778 3452 3170 2839 2685 2447 2303 2121 1916 1847 1688 1611 1473 1294
tg tg 180048 31.6 49 9.7e-01 16 -1.19 16 1339 1500 1613 1697 1838 1918 2091 2223 2400 2690 2928 3189 3521 3837 4226 4540 5122 5399 5475 5501 5429 5486 5434 5522 5385 5381 5487 5414 5461 5392 5342 5409 5504 5119 4686 4200 3801 3538 3147 2889 2616 2367 2209 2021 1915 1833 1670 1570 1500 1274 
 Host name	rsat
 Job started	2026-01-25.181058
 Job done	2026-01-25.181112
 Seconds	14.75
	user	14.75
	system	0.02
	cuser	0
;	csystem	0