One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: dyads_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m1_shift0 (dyads_m1) |
 |
|
|
; dyads_m1; m=0 (reference); ncol1=18; shift=0; ncol=18; gaGrGAGAGrGAGAGrga
; Alignment reference
a 507 1361 325 1047 182 2307 112 2255 163 1039 186 2322 100 2276 243 1032 549 1258
c 356 421 229 206 121 159 78 161 118 227 78 113 63 155 171 293 347 481
g 1582 565 1992 1321 2365 191 2500 202 2356 1348 2413 223 2511 190 2177 1252 1561 676
t 323 421 222 194 100 111 78 150 131 154 91 110 94 147 177 191 311 353
|
| Trl_rc_shift5 (Trl_rc) |
 |
|
|
; dyads_m1 versus Trl_rc; m=1/1; ncol2=13; w=0; offset=5; strand=R; shift=5; score=0.600661; -----agaGaGAGmrmaA
; cor=; Ncor=
a 0 0 0 0 0 42 17 46 7 50 11 62 0 40 26 30 41 57
c 0 0 0 0 0 14 9 6 1 9 8 11 5 27 10 24 13 0
g 0 0 0 0 0 3 47 16 56 12 56 0 72 3 41 19 8 10
t 0 0 0 0 0 18 4 9 13 6 2 4 0 7 0 4 15 10
|