One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/dyads_m6/peak-motifs_dyads_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/dyads_m6/peak-motifs_dyads_m6_vs_db_DMMPMM_drosophila

One-to-n matrix alignment; reference matrix: dyads_m6_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m6_shift0 (dyads_m6)				; dyads_m6; m=0 (reference); ncol1=19; shift=0; ncol=19; yyCTCycyctcyytCTCyy ; Alignment reference a 1234 1346 250 300 260 949 1219 1142 978 1283 1032 1107 1080 1378 263 324 237 1046 1262 c 2778 1785 6311 282 6363 1861 2924 1985 3414 1345 3531 1896 3039 1702 6302 292 6387 1894 2699 g 1006 1168 214 132 154 1289 1075 989 1196 986 1026 1355 955 1050 217 154 150 1300 1115 t 1889 2608 132 6193 130 2808 1689 2791 1319 3293 1318 2549 1833 2777 125 6137 133 2667 1831
Trl_shift5 (Trl)				; dyads_m6 versus Trl; m=1/1; ncol2=13; w=0; offset=5; strand=D; shift=5; score=0.484162; -----TtkykCTCtCtct- ; cor=; Ncor= a 0 0 0 0 0 10 15 4 0 7 0 4 2 6 13 9 4 18 0 c 0 0 0 0 0 10 8 19 41 3 72 0 56 12 56 16 47 3 0 g 0 0 0 0 0 0 13 24 10 27 5 11 8 9 1 6 9 14 0 t 0 0 0 0 0 57 41 30 26 40 0 62 11 50 7 46 17 42 0