One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/oligos_6-8nt_m7/peak-motifs_oligos_6-8nt_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/oligos_6-8nt_m7/peak-motifs_oligos_6-8nt_m7_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: oligos_6-8nt_m7_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6-8nt_m7_shift0 (oligos_6-8nt_m7) |
 |
|
|
; oligos_6-8nt_m7; m=0 (reference); ncol1=10; shift=0; ncol=10; ayACTCAChc
; Alignment reference
a 642 415 2030 0 9 69 1838 0 629 490
c 482 777 14 2059 34 1918 92 2033 527 732
g 499 224 4 4 0 4 6 4 301 333
t 440 647 15 0 2020 72 127 26 606 508
|
| z_rc_shift1 (z_rc) |
 |
|
|
; oligos_6-8nt_m7 versus z_rc; m=1/1; ncol2=6; w=0; offset=1; strand=R; shift=1; score=0.551132; -CaCTCA---
; cor=; Ncor=
a 0 5.12195 24.5854 0 0 0 29.7073 0 0 0
c 0 30.7317 0 42 0 42 3.07317 0 0 0
g 0 5.12195 10.2439 0 0 0 7.17073 0 0 0
t 0 1.02439 7.17073 0 42 0 2.04878 0 0 0
|