One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/oligos_6-8nt_m8/peak-motifs_oligos_6-8nt_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/oligos_6-8nt_m8/peak-motifs_oligos_6-8nt_m8_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: oligos_6-8nt_m8_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6-8nt_m8_shift0 (oligos_6-8nt_m8) |
 |
|
|
; oligos_6-8nt_m8; m=0 (reference); ncol1=11; shift=0; ncol=11; arTAGGAAGwr
; Alignment reference
a 1393 1372 362 3626 251 256 3765 3938 248 1372 1131
c 869 823 352 169 143 135 177 58 116 884 928
g 992 1088 466 196 3588 3657 112 99 3597 784 1201
t 919 890 2993 182 191 125 119 78 212 1133 913
|
| Eip74EF_shift2 (Eip74EF) |
 |
|
|
; oligos_6-8nt_m8 versus Eip74EF; m=1/1; ncol2=8; w=0; offset=2; strand=D; shift=2; score=0.586904; --mMGGAAkT-
; cor=; Ncor=
a 0 0 3 6 1 0 8 8 1 1 0
c 0 0 5 2 0 1 0 0 0 1 0
g 0 0 0 0 7 7 0 0 5 0 0
t 0 0 0 0 0 0 0 0 2 6 0
|