compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files match_table_html $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_disco_compa.html prefix $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_disco_compa match_table_txt $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html html_index $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html Matrices file1 25 matrices $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 12 2108 file1 2 11 5818 file1 3 10 983 file1 4 12 5744 file1 5 10 5808 file1 6 11 4772 file1 7 10 2569 file1 8 10 4195 file1 9 11 5547 file1 10 10 1387 file1 11 13 6662 ... 15 more matrices file2 25 matrices $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 12 2108 file2 2 11 5818 file2 3 10 983 file2 4 12 5744 file2 5 10 5808 file2 6 11 4772 file2 7 10 2569 file2 8 10 4195 file2 9 11 5547 file2 10 10 1387 file2 11 13 6662 ... 15 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6-8nt_m1 | oligos_6-8nt_m1 | oligos_6-8nt_m1 | oligos_6-8nt_m1 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m6 | dyads_m6 | dyads_m6 | dyads_m6 | 1.000 | 1.000 | 19 | 19 | 19 | 19 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m7 | dyads_m7 | dyads_m7 | dyads_m7 | 1.000 | 1.000 | 22 | 22 | 22 | 22 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m8 | dyads_m8 | dyads_m8 | dyads_m8 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m9 | dyads_m9 | dyads_m9 | dyads_m9 | 1.000 | 1.000 | 17 | 17 | 17 | 17 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m6 | oligos_6-8nt_m6 | oligos_6-8nt_m6 | oligos_6-8nt_m6 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m5 | dyads_m5 | dyads_m5 | dyads_m5 | 1.000 | 1.000 | 24 | 24 | 24 | 24 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m4 | dyads_m4 | dyads_m4 | dyads_m4 | 1.000 | 1.000 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m3 | positions_6-8nt_m3 | positions_6-8nt_m3 | positions_6-8nt_m3 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m3 | oligos_6-8nt_m3 | oligos_6-8nt_m3 | oligos_6-8nt_m3 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m1 | positions_6-8nt_m1 | positions_6-8nt_m1 | positions_6-8nt_m1 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m10 | dyads_m10 | dyads_m10 | dyads_m10 | 1.000 | 1.000 | 24 | 24 | 24 | 24 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m5 | positions_6-8nt_m5 | positions_6-8nt_m5 | positions_6-8nt_m5 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m2 | oligos_6-8nt_m2 | oligos_6-8nt_m2 | oligos_6-8nt_m2 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m4 | oligos_6-8nt_m4 | oligos_6-8nt_m4 | oligos_6-8nt_m4 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m2 | positions_6-8nt_m2 | positions_6-8nt_m2 | positions_6-8nt_m2 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m1 | dyads_m1 | dyads_m1 | dyads_m1 | 1.000 | 1.000 | 18 | 18 | 18 | 18 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m7 | oligos_6-8nt_m7 | oligos_6-8nt_m7 | oligos_6-8nt_m7 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m5 | oligos_6-8nt_m5 | oligos_6-8nt_m5 | oligos_6-8nt_m5 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m8 | oligos_6-8nt_m8 | oligos_6-8nt_m8 | oligos_6-8nt_m8 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m10 | oligos_6-8nt_m10 | oligos_6-8nt_m10 | oligos_6-8nt_m10 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m3 | dyads_m3 | dyads_m3 | dyads_m3 | 1.000 | 1.000 | 17 | 17 | 17 | 17 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m9 | oligos_6-8nt_m9 | oligos_6-8nt_m9 | oligos_6-8nt_m9 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m2 | dyads_m2 | dyads_m2 | dyads_m2 | 1.000 | 1.000 | 21 | 21 | 21 | 21 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m4 | positions_6-8nt_m4 | positions_6-8nt_m4 | positions_6-8nt_m4 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m9 | dyads_m1 | dyads_m9 | dyads_m1 | 0.966 | 0.913 | 17 | 18 | 17 | 18 | 0.9444 | 1.0000 | 0.9444 | D | -1 |
| dyads_m1 | dyads_m9 | dyads_m1 | dyads_m9 | 0.966 | 0.913 | 18 | 17 | 17 | 18 | 0.9444 | 0.9444 | 1.0000 | D | 1 |
| dyads_m10 | dyads_m5 | dyads_m10 | dyads_m5 | 0.960 | 0.884 | 24 | 24 | 23 | 25 | 0.9200 | 0.9583 | 0.9583 | D | -1 |
| dyads_m5 | dyads_m10 | dyads_m5 | dyads_m10 | 0.960 | 0.884 | 24 | 24 | 23 | 25 | 0.9200 | 0.9583 | 0.9583 | D | 1 |
| dyads_m7 | dyads_m10 | dyads_m7 | dyads_m10 | 0.960 | 0.880 | 22 | 24 | 22 | 24 | 0.9167 | 1.0000 | 0.9167 | D | -1 |
| dyads_m10 | dyads_m7 | dyads_m10 | dyads_m7 | 0.960 | 0.880 | 24 | 22 | 22 | 24 | 0.9167 | 0.9167 | 1.0000 | D | 1 |
| dyads_m7 | dyads_m5 | dyads_m7 | dyads_m5 | 0.958 | 0.878 | 22 | 24 | 22 | 24 | 0.9167 | 1.0000 | 0.9167 | D | -2 |
| dyads_m5 | dyads_m7 | dyads_m5 | dyads_m7 | 0.958 | 0.878 | 24 | 22 | 22 | 24 | 0.9167 | 0.9167 | 1.0000 | D | 2 |
| positions_6-8nt_m5 | oligos_6-8nt_m7 | positions_6-8nt_m5 | oligos_6-8nt_m7 | 0.755 | 0.755 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m7 | positions_6-8nt_m5 | oligos_6-8nt_m7 | positions_6-8nt_m5 | 0.755 | 0.755 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m3 | dyads_m7 | dyads_m3 | dyads_m7 | 0.939 | 0.726 | 17 | 22 | 17 | 22 | 0.7727 | 1.0000 | 0.7727 | D | -1 |
| dyads_m7 | dyads_m3 | dyads_m7 | dyads_m3 | 0.939 | 0.726 | 22 | 17 | 17 | 22 | 0.7727 | 0.7727 | 1.0000 | D | 1 |
| dyads_m5 | dyads_m3 | dyads_m5 | dyads_m3 | 0.975 | 0.691 | 24 | 17 | 17 | 24 | 0.7083 | 0.7083 | 1.0000 | D | 1 |
| dyads_m3 | dyads_m5 | dyads_m3 | dyads_m5 | 0.975 | 0.691 | 17 | 24 | 17 | 24 | 0.7083 | 1.0000 | 0.7083 | D | -1 |
| dyads_m3 | dyads_m10 | dyads_m3 | dyads_m10 | 0.971 | 0.688 | 17 | 24 | 17 | 24 | 0.7083 | 1.0000 | 0.7083 | D | 0 |
| dyads_m10 | dyads_m3 | dyads_m10 | dyads_m3 | 0.971 | 0.688 | 24 | 17 | 17 | 24 | 0.7083 | 0.7083 | 1.0000 | D | 0 |
| oligos_6-8nt_m6 | positions_6-8nt_m5 | oligos_6-8nt_m6 | positions_6-8nt_m5 | 0.891 | 0.685 | 13 | 10 | 10 | 13 | 0.7692 | 0.7692 | 1.0000 | D | 1 |
| positions_6-8nt_m5 | oligos_6-8nt_m6 | positions_6-8nt_m5 | oligos_6-8nt_m6 | 0.891 | 0.685 | 10 | 13 | 10 | 13 | 0.7692 | 1.0000 | 0.7692 | D | -1 |
| oligos_6-8nt_m6 | dyads_m3 | oligos_6-8nt_m6 | dyads_m3 | 0.895 | 0.685 | 13 | 17 | 13 | 17 | 0.7647 | 1.0000 | 0.7647 | D | -4 |
| dyads_m3 | oligos_6-8nt_m6 | dyads_m3 | oligos_6-8nt_m6 | 0.895 | 0.685 | 17 | 13 | 13 | 17 | 0.7647 | 0.7647 | 1.0000 | D | 4 |
| dyads_m1 | dyads_m6 | dyads_m1 | dyads_m6 | 0.783 | 0.665 | 18 | 19 | 17 | 20 | 0.8500 | 0.9444 | 0.8947 | R | -2 |
| dyads_m6 | dyads_m1 | dyads_m6 | dyads_m1 | 0.783 | 0.665 | 19 | 18 | 17 | 20 | 0.8500 | 0.8947 | 0.9444 | R | -1 |
| oligos_6-8nt_m3 | positions_6-8nt_m1 | oligos_6-8nt_m3 | positions_6-8nt_m1 | 0.793 | 0.661 | 10 | 12 | 10 | 12 | 0.8333 | 1.0000 | 0.8333 | D | -1 |
| positions_6-8nt_m1 | oligos_6-8nt_m3 | positions_6-8nt_m1 | oligos_6-8nt_m3 | 0.793 | 0.661 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | D | 1 |
| oligos_6-8nt_m2 | positions_6-8nt_m1 | oligos_6-8nt_m2 | positions_6-8nt_m1 | 0.773 | 0.644 | 10 | 12 | 10 | 12 | 0.8333 | 1.0000 | 0.8333 | D | -2 |
| positions_6-8nt_m1 | oligos_6-8nt_m2 | positions_6-8nt_m1 | oligos_6-8nt_m2 | 0.773 | 0.644 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | D | 2 |
| dyads_m9 | dyads_m6 | dyads_m9 | dyads_m6 | 0.776 | 0.620 | 17 | 19 | 16 | 20 | 0.8000 | 0.9412 | 0.8421 | R | -3 |
| dyads_m6 | dyads_m9 | dyads_m6 | dyads_m9 | 0.776 | 0.620 | 19 | 17 | 16 | 20 | 0.8000 | 0.8421 | 0.9412 | R | -1 |
| oligos_6-8nt_m3 | oligos_6-8nt_m2 | oligos_6-8nt_m3 | oligos_6-8nt_m2 | 0.742 | 0.607 | 10 | 10 | 9 | 11 | 0.8182 | 0.9000 | 0.9000 | D | 1 |
| oligos_6-8nt_m2 | oligos_6-8nt_m3 | oligos_6-8nt_m2 | oligos_6-8nt_m3 | 0.742 | 0.607 | 10 | 10 | 9 | 11 | 0.8182 | 0.9000 | 0.9000 | D | -1 |
| oligos_6-8nt_m7 | oligos_6-8nt_m6 | oligos_6-8nt_m7 | oligos_6-8nt_m6 | 0.749 | 0.576 | 10 | 13 | 10 | 13 | 0.7692 | 1.0000 | 0.7692 | D | -1 |
| oligos_6-8nt_m6 | oligos_6-8nt_m7 | oligos_6-8nt_m6 | oligos_6-8nt_m7 | 0.749 | 0.576 | 13 | 10 | 10 | 13 | 0.7692 | 0.7692 | 1.0000 | D | 1 |
| positions_6-8nt_m5 | dyads_m3 | positions_6-8nt_m5 | dyads_m3 | 0.959 | 0.564 | 10 | 17 | 10 | 17 | 0.5882 | 1.0000 | 0.5882 | D | -7 |
| dyads_m3 | positions_6-8nt_m5 | dyads_m3 | positions_6-8nt_m5 | 0.959 | 0.564 | 17 | 10 | 10 | 17 | 0.5882 | 0.5882 | 1.0000 | D | 7 |
| dyads_m7 | oligos_6-8nt_m6 | dyads_m7 | oligos_6-8nt_m6 | 0.896 | 0.529 | 22 | 13 | 13 | 22 | 0.5909 | 0.5909 | 1.0000 | D | 3 |
| oligos_6-8nt_m6 | dyads_m7 | oligos_6-8nt_m6 | dyads_m7 | 0.896 | 0.529 | 13 | 22 | 13 | 22 | 0.5909 | 1.0000 | 0.5909 | D | -3 |
| dyads_m10 | oligos_6-8nt_m6 | dyads_m10 | oligos_6-8nt_m6 | 0.887 | 0.480 | 24 | 13 | 13 | 24 | 0.5417 | 0.5417 | 1.0000 | D | 4 |
| oligos_6-8nt_m6 | dyads_m10 | oligos_6-8nt_m6 | dyads_m10 | 0.887 | 0.480 | 13 | 24 | 13 | 24 | 0.5417 | 1.0000 | 0.5417 | D | -4 |
| oligos_6-8nt_m6 | dyads_m5 | oligos_6-8nt_m6 | dyads_m5 | 0.881 | 0.477 | 13 | 24 | 13 | 24 | 0.5417 | 1.0000 | 0.5417 | D | -1 |
| dyads_m5 | oligos_6-8nt_m6 | dyads_m5 | oligos_6-8nt_m6 | 0.881 | 0.477 | 24 | 13 | 13 | 24 | 0.5417 | 0.5417 | 1.0000 | D | 1 |
| dyads_m7 | positions_6-8nt_m5 | dyads_m7 | positions_6-8nt_m5 | 0.952 | 0.433 | 22 | 10 | 10 | 22 | 0.4545 | 0.4545 | 1.0000 | D | 4 |
| positions_6-8nt_m5 | dyads_m7 | positions_6-8nt_m5 | dyads_m7 | 0.952 | 0.433 | 10 | 22 | 10 | 22 | 0.4545 | 1.0000 | 0.4545 | D | -4 |
| dyads_m2 | positions_6-8nt_m4 | dyads_m2 | positions_6-8nt_m4 | 0.705 | 0.403 | 21 | 12 | 12 | 21 | 0.5714 | 0.5714 | 1.0000 | D | 9 |
| positions_6-8nt_m4 | dyads_m2 | positions_6-8nt_m4 | dyads_m2 | 0.705 | 0.403 | 12 | 21 | 12 | 21 | 0.5714 | 1.0000 | 0.5714 | D | -9 |
| dyads_m5 | positions_6-8nt_m5 | dyads_m5 | positions_6-8nt_m5 | 0.961 | 0.401 | 24 | 10 | 10 | 24 | 0.4167 | 0.4167 | 1.0000 | D | 2 |
| positions_6-8nt_m5 | dyads_m5 | positions_6-8nt_m5 | dyads_m5 | 0.961 | 0.401 | 10 | 24 | 10 | 24 | 0.4167 | 1.0000 | 0.4167 | D | -2 |
Host name rsat Job started 2026-01-25.181452 Job done 2026-01-25.181519 Seconds 3.76 user 3.76 system 1.42 cuser 20.01 ; csystem 2.34