/var/www/html/rsat/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila
 Matrices
	file1	25 matrices	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	12	2108
		file1	2	11	5818
		file1	3	10	983
		file1	4	12	5744
		file1	5	10	5808
		file1	6	11	4772
		file1	7	10	2569
		file1	8	10	4195
		file1	9	11	5547
		file1	10	10	1387
		file1	11	13	6662
		...	15 more matrices
	file2	41 matrices	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
		file2		1		6		45.00005
		file2		2		6		18
		file2		3		6		14
		file2		4		8		49.00004
		file2		5		8		18.00005
		file2		6		7		21
		file2		7		11		16
		file2		8		8		8
		file2		9		7		11
		file2		10		8		10
		file2		11		9		13
		...	31 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m9 Trl dyads_m9 Trl 0.864 0.661 17 13 13 17 0.7647 0.7647 1.0000 R 4
oligos_6-8nt_m9 en oligos_6-8nt_m9 en 0.762 0.610 10 8 8 10 0.8000 0.8000 1.0000 R 1
dyads_m1 Trl dyads_m1 Trl 0.832 0.601 18 13 13 18 0.7222 0.7222 1.0000 R 5
oligos_6-8nt_m8 Eip74EF oligos_6-8nt_m8 Eip74EF 0.807 0.587 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_6-8nt_m7 z oligos_6-8nt_m7 z 0.919 0.551 10 6 6 10 0.6000 0.6000 1.0000 R 1
oligos_6-8nt_m9 sd oligos_6-8nt_m9 sd 0.776 0.538 10 12 9 13 0.6923 0.9000 0.7500 R 1
positions_6-8nt_m4 br-Z1 positions_6-8nt_m4 br-Z1 0.756 0.504 12 8 8 12 0.6667 0.6667 1.0000 D 2
positions_6-8nt_m4 en positions_6-8nt_m4 en 0.733 0.489 12 8 8 12 0.6667 0.6667 1.0000 R 4
oligos_6-8nt_m9 zen oligos_6-8nt_m9 zen 0.808 0.485 10 6 6 10 0.6000 0.6000 1.0000 D 2
dyads_m6 Trl dyads_m6 Trl 0.708 0.484 19 13 13 19 0.6842 0.6842 1.0000 D 5
positions_6-8nt_m4 eve positions_6-8nt_m4 eve 0.726 0.484 12 8 8 12 0.6667 0.6667 1.0000 D 2
positions_6-8nt_m4 br-Z4 positions_6-8nt_m4 br-Z4 0.709 0.473 12 8 8 12 0.6667 0.6667 1.0000 R 0
positions_6-8nt_m4 Antp positions_6-8nt_m4 Antp 0.935 0.468 12 6 6 12 0.5000 0.5000 1.0000 D 5
positions_6-8nt_m5 twi positions_6-8nt_m5 twi 0.728 0.463 10 8 7 11 0.6364 0.7000 0.8750 D 3
oligos_6-8nt_m2 br-Z1 oligos_6-8nt_m2 br-Z1 0.722 0.459 10 8 7 11 0.6364 0.7000 0.8750 D 3
positions_6-8nt_m4 ap positions_6-8nt_m4 ap 0.906 0.453 12 6 6 12 0.5000 0.5000 1.0000 D 2
positions_6-8nt_m4 zen positions_6-8nt_m4 zen 0.894 0.447 12 6 6 12 0.5000 0.5000 1.0000 D 5
positions_6-8nt_m4 gt positions_6-8nt_m4 gt 0.765 0.446 12 7 7 12 0.5833 0.5833 1.0000 D 0
oligos_6-8nt_m9 ap oligos_6-8nt_m9 ap 0.704 0.422 10 6 6 10 0.6000 0.6000 1.0000 D 2
positions_6-8nt_m4 abd-A positions_6-8nt_m4 abd-A 0.842 0.421 12 6 6 12 0.5000 0.5000 1.0000 D 6
positions_6-8nt_m3 tin positions_6-8nt_m3 tin 0.763 0.416 10 7 6 11 0.5455 0.6000 0.8571 R 4 
 Host name	rsat
 Job started	2026-01-25.181534
 Job done	2026-01-25.181541
 Seconds	0.99
	user	0.99
	system	0.26
	cuser	4.62
;	csystem	0.72