One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.181029_2026-01-25.181029_PUJ88V/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab

One-to-n matrix alignment; reference matrix: dyads_m9_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m9_shift0 (dyads_m9)
; dyads_m9; m=0 (reference); ncol1=17; shift=0; ncol=17; agrGAGAGAGAGAGrga ; Alignment reference a 1657 610 1459 259 2892 258 2908 225 2732 196 2915 150 2821 221 1338 635 1635 c 567 464 338 225 234 97 234 90 266 91 205 86 241 119 426 447 622 g 702 1976 1356 2812 153 2993 149 3025 284 3045 182 3108 200 2952 1465 1993 798 t 494 370 267 124 141 72 129 80 138 88 118 76 158 128 191 345 365

Trl_rc_shift4 (Trl_rc)
; dyads_m9 versus Trl_rc; m=1/1; ncol2=13; w=0; offset=4; strand=R; shift=4; score=0.661031; ----agaGaGAGmrmaA ; cor=; Ncor= a 0 0 0 0 42 17 46 7 50 11 62 0 40 26 30 41 57 c 0 0 0 0 14 9 6 1 9 8 11 5 27 10 24 13 0 g 0 0 0 0 3 47 16 56 12 56 0 72 3 41 19 8 10 t 0 0 0 0 18 4 9 13 6 2 4 0 7 0 4 15 10

One-to-n matrix alignment; reference matrix: oligos_6-8nt_m9_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6-8nt_m9_shift0 (oligos_6-8nt_m9)
; oligos_6-8nt_m9; m=0 (reference); ncol1=10; shift=0; ncol=10; waAATGAAaw ; Alignment reference a 700 1027 2381 2381 0 0 2381 2381 1101 836 c 482 452 0 0 0 0 0 0 337 368 g 529 495 0 0 0 2381 0 0 374 440 t 670 407 0 0 2381 0 0 0 569 737

en_rc_shift1 (en_rc)
; oligos_6-8nt_m9 versus en_rc; m=1/4; ncol2=8; w=0; offset=1; strand=R; shift=1; score=0.609738; -yAATtAah- ; cor=; Ncor= a 0 10.125 58.5 57.375 1.125 5.625 51.75 31.5 18 0 c 0 31.5 3.375 2.25 0 14.625 4.5 11.25 21.375 0 g 0 1.125 0 1.125 1.125 6.75 6.75 12.375 0 0 t 0 20.25 1.125 2.25 60.75 36 0 7.875 23.625 0

sd_rc_shift1 (sd_rc)
; oligos_6-8nt_m9 versus sd_rc; m=2/4; ncol2=12; w=0; offset=1; strand=R; shift=1; score=0.537557; -mAAwGdAAT ; cor=; Ncor= a 0 8 16 14 7 0 9 13 15 1 c 0 7 0 0 0 4 0 3 0 1 g 0 4 0 1 2 14 5 0 3 1 t 0 0 3 4 10 1 5 3 1 16

zen_shift2 (zen)
; oligos_6-8nt_m9 versus zen; m=3/4; ncol2=6; w=0; offset=2; strand=D; shift=2; score=0.484903; --AATwAA-- ; cor=; Ncor= a 0 0 11.9167 11.9167 0 8.66667 13 13 0 0 c 0 0 0.541667 0 1.08333 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 t 0 0 0.541667 1.08333 11.9167 4.33333 0 0 0 0

ap_shift2 (ap)
; oligos_6-8nt_m9 versus ap; m=4/4; ncol2=6; w=0; offset=2; strand=D; shift=2; score=0.422116; --AAThAt-- ; cor=; Ncor= a 0 0 14 14 0 5 13 2 0 0 c 0 0 0 0 1 4 0 1 0 0 g 0 0 0 0 1 1 1 3 0 0 t 0 0 0 0 12 4 0 8 0 0

One-to-n matrix alignment; reference matrix: dyads_m1_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m1_shift0 (dyads_m1)
; dyads_m1; m=0 (reference); ncol1=18; shift=0; ncol=18; gaGrGAGAGrGAGAGrga ; Alignment reference a 507 1361 325 1047 182 2307 112 2255 163 1039 186 2322 100 2276 243 1032 549 1258 c 356 421 229 206 121 159 78 161 118 227 78 113 63 155 171 293 347 481 g 1582 565 1992 1321 2365 191 2500 202 2356 1348 2413 223 2511 190 2177 1252 1561 676 t 323 421 222 194 100 111 78 150 131 154 91 110 94 147 177 191 311 353

Trl_rc_shift5 (Trl_rc)
; dyads_m1 versus Trl_rc; m=1/1; ncol2=13; w=0; offset=5; strand=R; shift=5; score=0.600661; -----agaGaGAGmrmaA ; cor=; Ncor= a 0 0 0 0 0 42 17 46 7 50 11 62 0 40 26 30 41 57 c 0 0 0 0 0 14 9 6 1 9 8 11 5 27 10 24 13 0 g 0 0 0 0 0 3 47 16 56 12 56 0 72 3 41 19 8 10 t 0 0 0 0 0 18 4 9 13 6 2 4 0 7 0 4 15 10

One-to-n matrix alignment; reference matrix: oligos_6-8nt_m8_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6-8nt_m8_shift0 (oligos_6-8nt_m8)
; oligos_6-8nt_m8; m=0 (reference); ncol1=11; shift=0; ncol=11; arTAGGAAGwr ; Alignment reference a 1393 1372 362 3626 251 256 3765 3938 248 1372 1131 c 869 823 352 169 143 135 177 58 116 884 928 g 992 1088 466 196 3588 3657 112 99 3597 784 1201 t 919 890 2993 182 191 125 119 78 212 1133 913

Eip74EF_shift2 (Eip74EF)
; oligos_6-8nt_m8 versus Eip74EF; m=1/1; ncol2=8; w=0; offset=2; strand=D; shift=2; score=0.586904; --mMGGAAkT- ; cor=; Ncor= a 0 0 3 6 1 0 8 8 1 1 0 c 0 0 5 2 0 1 0 0 0 1 0 g 0 0 0 0 7 7 0 0 5 0 0 t 0 0 0 0 0 0 0 0 2 6 0

One-to-n matrix alignment; reference matrix: oligos_6-8nt_m7_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6-8nt_m7_shift0 (oligos_6-8nt_m7)
; oligos_6-8nt_m7; m=0 (reference); ncol1=10; shift=0; ncol=10; ayACTCAChc ; Alignment reference a 642 415 2030 0 9 69 1838 0 629 490 c 482 777 14 2059 34 1918 92 2033 527 732 g 499 224 4 4 0 4 6 4 301 333 t 440 647 15 0 2020 72 127 26 606 508

z_rc_shift1 (z_rc)
; oligos_6-8nt_m7 versus z_rc; m=1/1; ncol2=6; w=0; offset=1; strand=R; shift=1; score=0.551132; -CaCTCA--- ; cor=; Ncor= a 0 5.12195 24.5854 0 0 0 29.7073 0 0 0 c 0 30.7317 0 42 0 42 3.07317 0 0 0 g 0 5.12195 10.2439 0 0 0 7.17073 0 0 0 t 0 1.02439 7.17073 0 42 0 2.04878 0 0 0

One-to-n matrix alignment; reference matrix: positions_6-8nt_m4_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6-8nt_m4_shift0 (positions_6-8nt_m4)
; positions_6-8nt_m4; m=0 (reference); ncol1=12; shift=0; ncol=12; wwAATAATAAww ; Alignment reference a 2260 2331 5328 5299 723 5275 5253 631 5235 5243 2150 2257 c 934 1129 123 92 337 100 119 399 124 137 1086 991 g 1004 801 121 97 127 122 104 194 117 127 767 866 t 1546 1483 172 256 4557 247 268 4520 268 237 1741 1630

br-Z1_shift2 (br-Z1)
; positions_6-8nt_m4 versus br-Z1; m=1/9; ncol2=8; w=0; offset=2; strand=D; shift=2; score=0.504114; --raTaCwAA-- ; cor=; Ncor= a 0 0 10.5882 11.6471 2.11765 11.6471 3.17647 9.52941 15.8824 18 0 0 c 0 0 0 0 0 3.17647 12.7059 1.05882 2.11765 0 0 0 g 0 0 7.41176 3.17647 1.05882 3.17647 2.11765 0 0 0 0 0 t 0 0 0 3.17647 14.8235 0 0 7.41176 0 0 0 0

en_rc_shift4 (en_rc)
; positions_6-8nt_m4 versus en_rc; m=2/9; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.488582; ----yAATtAah ; cor=; Ncor= a 0 0 0 0 10.125 58.5 57.375 1.125 5.625 51.75 31.5 18 c 0 0 0 0 31.5 3.375 2.25 0 14.625 4.5 11.25 21.375 g 0 0 0 0 1.125 0 1.125 1.125 6.75 6.75 12.375 0 t 0 0 0 0 20.25 1.125 2.25 60.75 36 0 7.875 23.625

eve_shift2 (eve)
; positions_6-8nt_m4 versus eve; m=3/9; ncol2=8; w=0; offset=2; strand=D; shift=2; score=0.484153; --mACaaTwA-- ; cor=; Ncor= a 0 0 8 18 1 13 13 0 9 19 0 0 c 0 0 9 0 16 3 0 1 1 0 0 0 g 0 0 3 2 0 4 3 0 1 0 0 0 t 0 0 0 0 3 0 4 19 9 1 0 0

br-Z4_rc_shift0 (br-Z4_rc)
; positions_6-8nt_m4 versus br-Z4_rc; m=4/9; ncol2=8; w=0; offset=0; strand=R; shift=0; score=0.472675; TAAhYAdT---- ; cor=; Ncor= a 1 7 8 2 0 8 3 1 0 0 0 0 c 0 0 0 3 2 0 0 0 0 0 0 0 g 0 0 0 0 0 0 2 0 0 0 0 0 t 7 1 0 3 6 0 3 7 0 0 0 0

Antp_shift5 (Antp)
; positions_6-8nt_m4 versus Antp; m=5/9; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.46758; -----mATAAw- ; cor=; Ncor= a 0 0 0 0 0 10.5 18 0 16.5 18 7.5 0 c 0 0 0 0 0 4.5 0 0 0 0 0 0 g 0 0 0 0 0 3 0 0 1.5 0 0 0 t 0 0 0 0 0 0 0 18 0 0 10.5 0

ap_shift2 (ap)
; positions_6-8nt_m4 versus ap; m=6/9; ncol2=6; w=0; offset=2; strand=D; shift=2; score=0.453183; --AAThAt---- ; cor=; Ncor= a 0 0 14 14 0 5 13 2 0 0 0 0 c 0 0 0 0 1 4 0 1 0 0 0 0 g 0 0 0 0 1 1 1 3 0 0 0 0 t 0 0 0 0 12 4 0 8 0 0 0 0

zen_shift5 (zen)
; positions_6-8nt_m4 versus zen; m=7/9; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.446892; -----AATwAA- ; cor=; Ncor= a 0 0 0 0 0 11.9167 11.9167 0 8.66667 13 13 0 c 0 0 0 0 0 0.541667 0 1.08333 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0.541667 1.08333 11.9167 4.33333 0 0 0

gt_shift0 (gt)
; positions_6-8nt_m4 versus gt; m=8/9; ncol2=7; w=0; offset=0; strand=D; shift=0; score=0.44646; GTmAwAW----- ; cor=; Ncor= a 0 1 5 8 3 8 6 0 0 0 0 0 c 1 1 3 0 0 0 0 0 0 0 0 0 g 7 0 0 0 0 0 0 0 0 0 0 0 t 0 6 0 0 5 0 2 0 0 0 0 0

abd-A_shift6 (abd-A)
; positions_6-8nt_m4 versus abd-A; m=9/9; ncol2=6; w=0; offset=6; strand=D; shift=6; score=0.421067; ------aTAAWT ; cor=; Ncor= a 0 0 0 0 0 0 27.439 0 40.6098 40.6098 14.2683 0 c 0 0 0 0 0 0 5.4878 3.29268 1.09756 0 0 3.29268 g 0 0 0 0 0 0 4.39024 1.09756 3.29268 0 0 6.58537 t 0 0 0 0 0 0 7.68293 40.6098 0 4.39024 30.7317 35.122

One-to-n matrix alignment; reference matrix: dyads_m6_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m6_shift0 (dyads_m6)
; dyads_m6; m=0 (reference); ncol1=19; shift=0; ncol=19; yyCTCycyctcyytCTCyy ; Alignment reference a 1234 1346 250 300 260 949 1219 1142 978 1283 1032 1107 1080 1378 263 324 237 1046 1262 c 2778 1785 6311 282 6363 1861 2924 1985 3414 1345 3531 1896 3039 1702 6302 292 6387 1894 2699 g 1006 1168 214 132 154 1289 1075 989 1196 986 1026 1355 955 1050 217 154 150 1300 1115 t 1889 2608 132 6193 130 2808 1689 2791 1319 3293 1318 2549 1833 2777 125 6137 133 2667 1831

Trl_shift5 (Trl)
; dyads_m6 versus Trl; m=1/1; ncol2=13; w=0; offset=5; strand=D; shift=5; score=0.484162; -----TtkykCTCtCtct- ; cor=; Ncor= a 0 0 0 0 0 10 15 4 0 7 0 4 2 6 13 9 4 18 0 c 0 0 0 0 0 10 8 19 41 3 72 0 56 12 56 16 47 3 0 g 0 0 0 0 0 0 13 24 10 27 5 11 8 9 1 6 9 14 0 t 0 0 0 0 0 57 41 30 26 40 0 62 11 50 7 46 17 42 0

One-to-n matrix alignment; reference matrix: positions_6-8nt_m5_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6-8nt_m5_shift0 (positions_6-8nt_m5)
; positions_6-8nt_m5; m=0 (reference); ncol1=10; shift=0; ncol=10; acACACACac ; Alignment reference a 3234 818 5808 0 5705 0 5739 0 3405 906 c 764 3452 0 5651 34 5616 19 5751 585 3242 g 1164 365 0 1 0 5 0 10 898 737 t 646 1173 0 156 69 187 50 47 920 923

twi_shift3 (twi)
; positions_6-8nt_m5 versus twi; m=1/1; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.462983; ---mACAyaT ; cor=; Ncor= a 0 0 0 10.6667 12.8 0 16 1.06667 10.6667 0 c 0 0 0 5.33333 3.2 16 0 7.46667 3.2 3.2 g 0 0 0 0 0 0 0 1.06667 2.13333 1.06667 t 0 0 0 0 0 0 0 6.4 0 11.7333

One-to-n matrix alignment; reference matrix: oligos_6-8nt_m2_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6-8nt_m2_shift0 (oligos_6-8nt_m2)
; oligos_6-8nt_m2; m=0 (reference); ncol1=10; shift=0; ncol=10; atAGATACww ; Alignment reference a 1041 447 2425 0 2382 0 2537 17 987 715 c 427 578 80 52 35 1 25 2256 411 627 g 614 435 50 2021 86 46 0 86 412 500 t 487 1109 14 496 66 2522 7 210 759 727

br-Z1_shift3 (br-Z1)
; oligos_6-8nt_m2 versus br-Z1; m=1/1; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.459406; ---raTaCwA ; cor=; Ncor= a 0 0 0 10.5882 11.6471 2.11765 11.6471 3.17647 9.52941 15.8824 c 0 0 0 0 0 0 3.17647 12.7059 1.05882 2.11765 g 0 0 0 7.41176 3.17647 1.05882 3.17647 2.11765 0 0 t 0 0 0 0 3.17647 14.8235 0 0 7.41176 0

One-to-n matrix alignment; reference matrix: positions_6-8nt_m3_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6-8nt_m3_shift0 (positions_6-8nt_m3)
; positions_6-8nt_m3; m=0 (reference); ncol1=10; shift=0; ncol=10; wwCGTCAAcr ; Alignment reference a 246 282 0 0 0 0 809 964 223 279 c 211 209 983 0 0 983 6 9 288 214 g 243 208 0 983 0 0 29 5 232 265 t 283 284 0 0 983 0 139 5 240 225

tin_rc_shift4 (tin_rc)
; positions_6-8nt_m3 versus tin_rc; m=1/1; ncol2=7; w=0; offset=4; strand=R; shift=4; score=0.416108; ----TCAAGT ; cor=; Ncor= a 0 0 0 0 0 0 11 11 0 0 c 0 0 0 0 1 8 0 0 0 0 g 0 0 0 0 0 1 0 0 11 1 t 0 0 0 0 10 2 0 0 0 10

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6-8nt_m9_shift0 (oligos_6-8nt_m9)				; oligos_6-8nt_m9; m=0 (reference); ncol1=10; shift=0; ncol=10; waAATGAAaw ; Alignment reference a 700 1027 2381 2381 0 0 2381 2381 1101 836 c 482 452 0 0 0 0 0 0 337 368 g 529 495 0 0 0 2381 0 0 374 440 t 670 407 0 0 2381 0 0 0 569 737
en_rc_shift1 (en_rc)				; oligos_6-8nt_m9 versus en_rc; m=1/4; ncol2=8; w=0; offset=1; strand=R; shift=1; score=0.609738; -yAATtAah- ; cor=; Ncor= a 0 10.125 58.5 57.375 1.125 5.625 51.75 31.5 18 0 c 0 31.5 3.375 2.25 0 14.625 4.5 11.25 21.375 0 g 0 1.125 0 1.125 1.125 6.75 6.75 12.375 0 0 t 0 20.25 1.125 2.25 60.75 36 0 7.875 23.625 0
sd_rc_shift1 (sd_rc)				; oligos_6-8nt_m9 versus sd_rc; m=2/4; ncol2=12; w=0; offset=1; strand=R; shift=1; score=0.537557; -mAAwGdAAT ; cor=; Ncor= a 0 8 16 14 7 0 9 13 15 1 c 0 7 0 0 0 4 0 3 0 1 g 0 4 0 1 2 14 5 0 3 1 t 0 0 3 4 10 1 5 3 1 16
zen_shift2 (zen)				; oligos_6-8nt_m9 versus zen; m=3/4; ncol2=6; w=0; offset=2; strand=D; shift=2; score=0.484903; --AATwAA-- ; cor=; Ncor= a 0 0 11.9167 11.9167 0 8.66667 13 13 0 0 c 0 0 0.541667 0 1.08333 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 t 0 0 0.541667 1.08333 11.9167 4.33333 0 0 0 0
ap_shift2 (ap)				; oligos_6-8nt_m9 versus ap; m=4/4; ncol2=6; w=0; offset=2; strand=D; shift=2; score=0.422116; --AAThAt-- ; cor=; Ncor= a 0 0 14 14 0 5 13 2 0 0 c 0 0 0 0 1 4 0 1 0 0 g 0 0 0 0 1 1 1 3 0 0 t 0 0 0 0 12 4 0 8 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6-8nt_m4_shift0 (positions_6-8nt_m4)				; positions_6-8nt_m4; m=0 (reference); ncol1=12; shift=0; ncol=12; wwAATAATAAww ; Alignment reference a 2260 2331 5328 5299 723 5275 5253 631 5235 5243 2150 2257 c 934 1129 123 92 337 100 119 399 124 137 1086 991 g 1004 801 121 97 127 122 104 194 117 127 767 866 t 1546 1483 172 256 4557 247 268 4520 268 237 1741 1630
br-Z1_shift2 (br-Z1)				; positions_6-8nt_m4 versus br-Z1; m=1/9; ncol2=8; w=0; offset=2; strand=D; shift=2; score=0.504114; --raTaCwAA-- ; cor=; Ncor= a 0 0 10.5882 11.6471 2.11765 11.6471 3.17647 9.52941 15.8824 18 0 0 c 0 0 0 0 0 3.17647 12.7059 1.05882 2.11765 0 0 0 g 0 0 7.41176 3.17647 1.05882 3.17647 2.11765 0 0 0 0 0 t 0 0 0 3.17647 14.8235 0 0 7.41176 0 0 0 0
en_rc_shift4 (en_rc)				; positions_6-8nt_m4 versus en_rc; m=2/9; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.488582; ----yAATtAah ; cor=; Ncor= a 0 0 0 0 10.125 58.5 57.375 1.125 5.625 51.75 31.5 18 c 0 0 0 0 31.5 3.375 2.25 0 14.625 4.5 11.25 21.375 g 0 0 0 0 1.125 0 1.125 1.125 6.75 6.75 12.375 0 t 0 0 0 0 20.25 1.125 2.25 60.75 36 0 7.875 23.625
eve_shift2 (eve)				; positions_6-8nt_m4 versus eve; m=3/9; ncol2=8; w=0; offset=2; strand=D; shift=2; score=0.484153; --mACaaTwA-- ; cor=; Ncor= a 0 0 8 18 1 13 13 0 9 19 0 0 c 0 0 9 0 16 3 0 1 1 0 0 0 g 0 0 3 2 0 4 3 0 1 0 0 0 t 0 0 0 0 3 0 4 19 9 1 0 0
br-Z4_rc_shift0 (br-Z4_rc)				; positions_6-8nt_m4 versus br-Z4_rc; m=4/9; ncol2=8; w=0; offset=0; strand=R; shift=0; score=0.472675; TAAhYAdT---- ; cor=; Ncor= a 1 7 8 2 0 8 3 1 0 0 0 0 c 0 0 0 3 2 0 0 0 0 0 0 0 g 0 0 0 0 0 0 2 0 0 0 0 0 t 7 1 0 3 6 0 3 7 0 0 0 0
Antp_shift5 (Antp)				; positions_6-8nt_m4 versus Antp; m=5/9; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.46758; -----mATAAw- ; cor=; Ncor= a 0 0 0 0 0 10.5 18 0 16.5 18 7.5 0 c 0 0 0 0 0 4.5 0 0 0 0 0 0 g 0 0 0 0 0 3 0 0 1.5 0 0 0 t 0 0 0 0 0 0 0 18 0 0 10.5 0
ap_shift2 (ap)				; positions_6-8nt_m4 versus ap; m=6/9; ncol2=6; w=0; offset=2; strand=D; shift=2; score=0.453183; --AAThAt---- ; cor=; Ncor= a 0 0 14 14 0 5 13 2 0 0 0 0 c 0 0 0 0 1 4 0 1 0 0 0 0 g 0 0 0 0 1 1 1 3 0 0 0 0 t 0 0 0 0 12 4 0 8 0 0 0 0
zen_shift5 (zen)				; positions_6-8nt_m4 versus zen; m=7/9; ncol2=6; w=0; offset=5; strand=D; shift=5; score=0.446892; -----AATwAA- ; cor=; Ncor= a 0 0 0 0 0 11.9167 11.9167 0 8.66667 13 13 0 c 0 0 0 0 0 0.541667 0 1.08333 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0.541667 1.08333 11.9167 4.33333 0 0 0
gt_shift0 (gt)				; positions_6-8nt_m4 versus gt; m=8/9; ncol2=7; w=0; offset=0; strand=D; shift=0; score=0.44646; GTmAwAW----- ; cor=; Ncor= a 0 1 5 8 3 8 6 0 0 0 0 0 c 1 1 3 0 0 0 0 0 0 0 0 0 g 7 0 0 0 0 0 0 0 0 0 0 0 t 0 6 0 0 5 0 2 0 0 0 0 0
abd-A_shift6 (abd-A)				; positions_6-8nt_m4 versus abd-A; m=9/9; ncol2=6; w=0; offset=6; strand=D; shift=6; score=0.421067; ------aTAAWT ; cor=; Ncor= a 0 0 0 0 0 0 27.439 0 40.6098 40.6098 14.2683 0 c 0 0 0 0 0 0 5.4878 3.29268 1.09756 0 0 3.29268 g 0 0 0 0 0 0 4.39024 1.09756 3.29268 0 0 6.58537 t 0 0 0 0 0 0 7.68293 40.6098 0 4.39024 30.7317 35.122