position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title IDR-sumit100 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 1188 Sum of sequence lengths 237600 Min sequence length 0 Max sequence length 200 Average sequence length 200 Possible positions 237600 Oligonucleotide statistics: Total occurrences 237537 Position interval parameters: Position interval 20 Number of windows 10 Total positions 237600 Degrees of freedom 9 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -5 [-99,-80] -89.5 1188 23760 2 -4 [-79,-60] -69.5 1188 23760 3 -3 [-59,-40] -49.5 1188 23760 4 -2 [-39,-20] -29.5 1188 23760 5 -1 [-19,0] -9.5 1188 23760 6 0 [1,20] 10.5 1188 23760 7 1 [21,40] 30.5 1188 23760 8 2 [41,60] 50.5 1188 23760 9 3 [61,80] 70.5 1188 23760 10 4 [81,100] 90.5 1188 23760 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -89.5 occurrences in window 1 [-99,-80] 11 -69.5 occurrences in window 2 [-79,-60] 12 -49.5 occurrences in window 3 [-59,-40] 13 -29.5 occurrences in window 4 [-39,-20] 14 -9.5 occurrences in window 5 [-19,0] 15 10.5 occurrences in window 6 [1,20] 16 30.5 occurrences in window 7 [21,40] 17 50.5 occurrences in window 8 [41,60] 18 70.5 occurrences in window 9 [61,80] 19 90.5 occurrences in window 10 [81,100]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 57830 | 45.3 | 9 | 8.1e-07 | 3.2e-06 | 5.49 | 1 | 5898 | 5814 | 5740 | 5617 | 5568 | 5751 | 5644 | 5718 | 5952 | 6128 |
| c | c | 60769 | 44.8 | 9 | 1.0e-06 | 4e-06 | 5.40 | 2 | 5884 | 6172 | 6157 | 6259 | 6319 | 6193 | 6099 | 5995 | 5854 | 5837 |
| g | g | 60572 | 36.8 | 9 | 2.9e-05 | 0.00012 | 3.94 | 3 | 5884 | 5849 | 5949 | 6159 | 6156 | 6199 | 6248 | 6196 | 6078 | 5854 |
| a | a | 58366 | 29.7 | 9 | 4.9e-04 | 0.002 | 2.71 | 4 | 6094 | 5925 | 5914 | 5725 | 5717 | 5617 | 5749 | 5831 | 5856 | 5938 |
Host name rsat Job started 2026-01-25.184329 Job done 2026-01-25.184330 Seconds 1.18 user 1.18 system 0.02 cuser 0.01 ; csystem 0