/var/www/html/rsat/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title IDR-sumit100 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	1188
	Sum of sequence lengths      	237600
	Min sequence length          	0
	Max sequence length          	200
	Average sequence length      	200
	Possible positions           	236412
 Oligonucleotide statistics:
	Total occurrences    	236348
 Position interval parameters:
	Position interval    	20
	Number of windows    	10
	Total positions      	236412
	Degrees of freedom   	9
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-5	[-99,-80]	-89.5	1188	23760
	2	-4	[-79,-60]	-69.5	1188	23760
	3	-3	[-59,-40]	-49.5	1188	23760
	4	-2	[-39,-20]	-29.5	1188	23760
	5	-1	[-19,0]	-9.5	1188	23760
	6	0	[1,20]	10.5	1188	23760
	7	1	[21,40]	30.5	1188	23760
	8	2	[41,60]	50.5	1188	23760
	9	3	[61,80]	70.5	1188	23760
	10	4	[81,100]	90.5	1188	22572

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-89.5          	occurrences in window	1	[-99,-80]
	11	-69.5          	occurrences in window	2	[-79,-60]
	12	-49.5          	occurrences in window	3	[-59,-40]
	13	-29.5          	occurrences in window	4	[-39,-20]
	14	-9.5           	occurrences in window	5	[-19,0]
	15	10.5           	occurrences in window	6	[1,20]
	16	30.5           	occurrences in window	7	[21,40]
	17	50.5           	occurrences in window	8	[41,60]
	18	70.5           	occurrences in window	9	[61,80]
	19	90.5           	occurrences in window	10	[81,100]
seq id occ chi2 df Pval Eval sig rank -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5
tt tt 17181 73.0 9 4.0e-12 6.3e-11 10.20 1 1872 1782 1684 1605 1568 1677 1613 1733 1824 1823
cg cg 15969 46.8 9 4.3e-07 6.9e-06 5.16 2 1491 1541 1604 1633 1729 1716 1681 1639 1544 1391
gc gc 19441 43.9 9 1.5e-06 2.4e-05 4.63 3 1834 1879 2017 2052 2058 2015 1988 1988 1936 1674
aa aa 17313 35.6 9 4.6e-05 0.00074 3.13 4 1825 1789 1785 1640 1672 1604 1674 1795 1797 1732
at at 13536 33.9 9 9.5e-05 0.0015 2.82 5 1450 1389 1335 1317 1251 1317 1328 1333 1393 1423
cc cc 13811 26.6 9 1.6e-03 0.026 1.59 6 1318 1426 1373 1479 1408 1472 1396 1391 1278 1270
ta ta 9742 25.2 9 2.7e-03 0.044 1.36 7 1049 976 1017 912 926 942 942 961 1003 1014
ac ac 13388 22.2 9 8.3e-03 0.13 0.88 8 1376 1406 1414 1367 1390 1296 1341 1293 1232 1273
ca ca 17095 18.9 9 2.6e-02 0.42 0.38 9 1755 1797 1763 1773 1764 1641 1716 1640 1657 1589
gt gt 13207 17.6 9 4.1e-02 0.65 0.19 10 1257 1268 1275 1295 1327 1393 1393 1349 1359 1291
ag ag 13826 15.7 9 7.2e-02 1.2 -0.06 11 1443 1341 1380 1401 1404 1400 1406 1410 1434 1207
gg gg 13719 15.1 9 8.9e-02 1.4 -0.15 12 1329 1343 1303 1444 1389 1380 1415 1428 1418 1270
tg tg 16754 13.6 9 1.4e-01 2.2 -0.34 13 1607 1602 1686 1695 1647 1729 1714 1696 1709 1669
ct ct 13608 10.7 9 3.0e-01 4.8 -0.68 14 1320 1408 1417 1374 1418 1364 1306 1325 1375 1301
ga ga 13918 10.2 9 3.4e-01 5.4 -0.73 15 1464 1359 1354 1368 1382 1410 1452 1431 1365 1333
tc tc 13840 9.0 9 4.4e-01 7 -0.85 16 1370 1454 1353 1405 1427 1403 1375 1328 1416 1309 
 Host name	rsat
 Job started	2026-01-25.184331
 Job done	2026-01-25.184332
 Seconds	1.46
	user	1.46
	system	0.01
	cuser	0
;	csystem	0