One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: dyads_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m2_shift0 (dyads_m2) |
 |
|
|
; dyads_m2; m=0 (reference); ncol1=17; shift=0; ncol=17; tcyCTCTCyCTCTCccy
; Alignment reference
a 41 24 9 6 14 7 12 4 12 11 14 6 16 6 27 28 28
c 61 138 144 215 16 225 8 220 137 212 17 220 4 206 144 138 66
g 58 45 32 16 24 8 13 14 31 10 23 8 19 25 19 44 47
t 92 45 67 15 198 12 219 14 72 19 198 18 213 15 62 42 111
|
| Trl_shift0 (Trl) |
 |
|
|
; dyads_m2 versus Trl; m=1/1; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.615738; TtkykCTCtCtct----
; cor=; Ncor=
a 10 15 4 0 7 0 4 2 6 13 9 4 18 0 0 0 0
c 10 8 19 41 3 72 0 56 12 56 16 47 3 0 0 0 0
g 0 13 24 10 27 5 11 8 9 1 6 9 14 0 0 0 0
t 57 41 30 26 40 0 62 11 50 7 46 17 42 0 0 0 0
|