compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/oligos_6-8nt_m8/peak-motifs_oligos_6-8nt_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/oligos_6-8nt_m8/peak-motifs_oligos_6-8nt_m8_vs_db_DMMPMM_drosophila Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/oligos_6-8nt_m8/peak-motifs_oligos_6-8nt_m8.tf file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf Output files alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/oligos_6-8nt_m8/peak-motifs_oligos_6-8nt_m8_vs_db_DMMPMM_drosophila_alignments_1ton.html alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/oligos_6-8nt_m8/peak-motifs_oligos_6-8nt_m8_vs_db_DMMPMM_drosophila_alignments_1ton.tab match_table_html $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/oligos_6-8nt_m8/peak-motifs_oligos_6-8nt_m8_vs_db_DMMPMM_drosophila.html match_table_txt $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/oligos_6-8nt_m8/peak-motifs_oligos_6-8nt_m8_vs_db_DMMPMM_drosophila.tab prefix $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/oligos_6-8nt_m8/peak-motifs_oligos_6-8nt_m8_vs_db_DMMPMM_drosophila html_index $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/oligos_6-8nt_m8/peak-motifs_oligos_6-8nt_m8_vs_db_DMMPMM_drosophila_index.html Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/oligos_6-8nt_m8/peak-motifs_oligos_6-8nt_m8.tf file1 1 12 625 file2 41 matrices $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf file2 1 6 45.00005 file2 2 6 18 file2 3 6 14 file2 4 8 49.00004 file2 5 8 18.00005 file2 6 7 21 file2 7 11 16 file2 8 8 8 file2 9 7 11 file2 10 8 10 file2 11 9 13 ... 31 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6-8nt_m8 | br-Z4 | oligos_6-8nt_m8 | br-Z4 | 0.811 | 0.541 | 12 | 8 | 8 | 12 | 0.6667 | 0.6667 | 1.0000 | R | 3 |
| oligos_6-8nt_m8 | Antp | oligos_6-8nt_m8 | Antp | 0.887 | 0.443 | 12 | 6 | 6 | 12 | 0.5000 | 0.5000 | 1.0000 | D | 5 |
| oligos_6-8nt_m8 | zen | oligos_6-8nt_m8 | zen | 0.874 | 0.437 | 12 | 6 | 6 | 12 | 0.5000 | 0.5000 | 1.0000 | D | 1 |
| oligos_6-8nt_m8 | abd-A | oligos_6-8nt_m8 | abd-A | 0.853 | 0.426 | 12 | 6 | 6 | 12 | 0.5000 | 0.5000 | 1.0000 | D | 2 |
| oligos_6-8nt_m8 | br-Z2 | oligos_6-8nt_m8 | br-Z2 | 0.716 | 0.418 | 12 | 7 | 7 | 12 | 0.5833 | 0.5833 | 1.0000 | R | 3 |
Host name rsat Job started 2026-01-25.184503 Job done 2026-01-25.184504 Seconds 0.21 user 0.21 system 0.05 cuser 0.79 ; csystem 0.18