compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file2 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html match_table_html $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_disco_compa.html prefix $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_disco_compa html_index $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html match_table_txt $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Matrices file1 26 matrices $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 10 279 file1 2 10 108 file1 3 10 156 file1 4 10 235 file1 5 10 80 file1 6 12 417 file1 7 12 603 file1 8 16 170 file1 9 11 449 file1 10 13 526 file1 11 15 287 ... 16 more matrices file2 26 matrices $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 10 279 file2 2 10 108 file2 3 10 156 file2 4 10 235 file2 5 10 80 file2 6 12 417 file2 7 12 603 file2 8 16 170 file2 9 11 449 file2 10 13 526 file2 11 15 287 ... 16 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| dyads_m8 | dyads_m8 | dyads_m8 | dyads_m8 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m4 | positions_6-8nt_m4 | positions_6-8nt_m4 | positions_6-8nt_m4 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m9 | oligos_6-8nt_m9 | oligos_6-8nt_m9 | oligos_6-8nt_m9 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m7 | dyads_m7 | dyads_m7 | dyads_m7 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m7 | oligos_6-8nt_m7 | oligos_6-8nt_m7 | oligos_6-8nt_m7 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m4 | dyads_m4 | dyads_m4 | dyads_m4 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m2 | positions_6-8nt_m2 | positions_6-8nt_m2 | positions_6-8nt_m2 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m5 | oligos_6-8nt_m5 | oligos_6-8nt_m5 | oligos_6-8nt_m5 | 1.000 | 1.000 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m6 | positions_6-8nt_m6 | positions_6-8nt_m6 | positions_6-8nt_m6 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m6 | dyads_m6 | dyads_m6 | dyads_m6 | 1.000 | 1.000 | 16 | 16 | 16 | 16 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m1 | dyads_m1 | dyads_m1 | dyads_m1 | 1.000 | 1.000 | 16 | 16 | 16 | 16 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m8 | oligos_6-8nt_m8 | oligos_6-8nt_m8 | oligos_6-8nt_m8 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m10 | dyads_m10 | dyads_m10 | dyads_m10 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m5 | positions_6-8nt_m5 | positions_6-8nt_m5 | positions_6-8nt_m5 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m1 | positions_6-8nt_m1 | positions_6-8nt_m1 | positions_6-8nt_m1 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m4 | oligos_6-8nt_m4 | oligos_6-8nt_m4 | oligos_6-8nt_m4 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m1 | oligos_6-8nt_m1 | oligos_6-8nt_m1 | oligos_6-8nt_m1 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m2 | dyads_m2 | dyads_m2 | dyads_m2 | 1.000 | 1.000 | 17 | 17 | 17 | 17 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6-8nt_m3 | positions_6-8nt_m3 | positions_6-8nt_m3 | positions_6-8nt_m3 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m10 | oligos_6-8nt_m10 | oligos_6-8nt_m10 | oligos_6-8nt_m10 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m5 | dyads_m5 | dyads_m5 | dyads_m5 | 1.000 | 1.000 | 19 | 19 | 19 | 19 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m2 | oligos_6-8nt_m2 | oligos_6-8nt_m2 | oligos_6-8nt_m2 | 1.000 | 1.000 | 16 | 16 | 16 | 16 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m3 | oligos_6-8nt_m3 | oligos_6-8nt_m3 | oligos_6-8nt_m3 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m9 | dyads_m9 | dyads_m9 | dyads_m9 | 1.000 | 1.000 | 20 | 20 | 20 | 20 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m6 | oligos_6-8nt_m6 | oligos_6-8nt_m6 | oligos_6-8nt_m6 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m3 | dyads_m3 | dyads_m3 | dyads_m3 | 1.000 | 1.000 | 17 | 17 | 17 | 17 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m7 | positions_6-8nt_m6 | oligos_6-8nt_m7 | positions_6-8nt_m6 | 0.968 | 0.888 | 11 | 12 | 11 | 12 | 0.9167 | 1.0000 | 0.9167 | D | -1 |
| positions_6-8nt_m6 | oligos_6-8nt_m7 | positions_6-8nt_m6 | oligos_6-8nt_m7 | 0.968 | 0.888 | 12 | 11 | 11 | 12 | 0.9167 | 0.9167 | 1.0000 | D | 1 |
| oligos_6-8nt_m5 | dyads_m1 | oligos_6-8nt_m5 | dyads_m1 | 0.891 | 0.835 | 15 | 16 | 15 | 16 | 0.9375 | 1.0000 | 0.9375 | D | 0 |
| dyads_m1 | oligos_6-8nt_m5 | dyads_m1 | oligos_6-8nt_m5 | 0.891 | 0.835 | 16 | 15 | 15 | 16 | 0.9375 | 0.9375 | 1.0000 | D | 0 |
| oligos_6-8nt_m3 | oligos_6-8nt_m8 | oligos_6-8nt_m3 | oligos_6-8nt_m8 | 0.852 | 0.781 | 11 | 12 | 11 | 12 | 0.9167 | 1.0000 | 0.9167 | D | 0 |
| oligos_6-8nt_m8 | oligos_6-8nt_m3 | oligos_6-8nt_m8 | oligos_6-8nt_m3 | 0.852 | 0.781 | 12 | 11 | 11 | 12 | 0.9167 | 0.9167 | 1.0000 | D | 0 |
| oligos_6-8nt_m1 | oligos_6-8nt_m5 | oligos_6-8nt_m1 | oligos_6-8nt_m5 | 0.919 | 0.735 | 12 | 15 | 12 | 15 | 0.8000 | 1.0000 | 0.8000 | D | 0 |
| oligos_6-8nt_m5 | oligos_6-8nt_m1 | oligos_6-8nt_m5 | oligos_6-8nt_m1 | 0.919 | 0.735 | 15 | 12 | 12 | 15 | 0.8000 | 0.8000 | 1.0000 | D | 0 |
| dyads_m7 | dyads_m4 | dyads_m7 | dyads_m4 | 0.768 | 0.704 | 11 | 12 | 11 | 12 | 0.9167 | 1.0000 | 0.9167 | D | -1 |
| dyads_m4 | dyads_m7 | dyads_m4 | dyads_m7 | 0.768 | 0.704 | 12 | 11 | 11 | 12 | 0.9167 | 0.9167 | 1.0000 | D | 1 |
| oligos_6-8nt_m4 | dyads_m2 | oligos_6-8nt_m4 | dyads_m2 | 0.882 | 0.674 | 13 | 17 | 13 | 17 | 0.7647 | 1.0000 | 0.7647 | R | -2 |
| dyads_m2 | oligos_6-8nt_m4 | dyads_m2 | oligos_6-8nt_m4 | 0.882 | 0.674 | 17 | 13 | 13 | 17 | 0.7647 | 0.7647 | 1.0000 | R | 2 |
| oligos_6-8nt_m9 | dyads_m6 | oligos_6-8nt_m9 | dyads_m6 | 0.764 | 0.669 | 14 | 16 | 14 | 16 | 0.8750 | 1.0000 | 0.8750 | D | -2 |
| dyads_m6 | oligos_6-8nt_m9 | dyads_m6 | oligos_6-8nt_m9 | 0.764 | 0.669 | 16 | 14 | 14 | 16 | 0.8750 | 0.8750 | 1.0000 | D | 2 |
| oligos_6-8nt_m1 | dyads_m1 | oligos_6-8nt_m1 | dyads_m1 | 0.884 | 0.663 | 12 | 16 | 12 | 16 | 0.7500 | 1.0000 | 0.7500 | D | -4 |
| dyads_m1 | oligos_6-8nt_m1 | dyads_m1 | oligos_6-8nt_m1 | 0.884 | 0.663 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | D | 4 |
| oligos_6-8nt_m2 | oligos_6-8nt_m1 | oligos_6-8nt_m2 | oligos_6-8nt_m1 | 0.845 | 0.634 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | D | 0 |
| oligos_6-8nt_m1 | oligos_6-8nt_m2 | oligos_6-8nt_m1 | oligos_6-8nt_m2 | 0.845 | 0.634 | 12 | 16 | 12 | 16 | 0.7500 | 1.0000 | 0.7500 | D | 0 |
| oligos_6-8nt_m8 | positions_6-8nt_m6 | oligos_6-8nt_m8 | positions_6-8nt_m6 | 0.705 | 0.596 | 12 | 12 | 11 | 13 | 0.8462 | 0.9167 | 0.9167 | D | 1 |
| positions_6-8nt_m6 | oligos_6-8nt_m8 | positions_6-8nt_m6 | oligos_6-8nt_m8 | 0.705 | 0.596 | 12 | 12 | 11 | 13 | 0.8462 | 0.9167 | 0.9167 | D | -1 |
| oligos_6-8nt_m7 | oligos_6-8nt_m9 | oligos_6-8nt_m7 | oligos_6-8nt_m9 | 0.745 | 0.585 | 11 | 14 | 11 | 14 | 0.7857 | 1.0000 | 0.7857 | D | 0 |
| oligos_6-8nt_m9 | oligos_6-8nt_m7 | oligos_6-8nt_m9 | oligos_6-8nt_m7 | 0.745 | 0.585 | 14 | 11 | 11 | 14 | 0.7857 | 0.7857 | 1.0000 | D | 0 |
| positions_6-8nt_m4 | dyads_m4 | positions_6-8nt_m4 | dyads_m4 | 0.702 | 0.585 | 10 | 12 | 10 | 12 | 0.8333 | 1.0000 | 0.8333 | D | 0 |
| dyads_m4 | positions_6-8nt_m4 | dyads_m4 | positions_6-8nt_m4 | 0.702 | 0.585 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | D | 0 |
| dyads_m5 | oligos_6-8nt_m8 | dyads_m5 | oligos_6-8nt_m8 | 0.884 | 0.558 | 19 | 12 | 12 | 19 | 0.6316 | 0.6316 | 1.0000 | D | 0 |
| oligos_6-8nt_m8 | dyads_m5 | oligos_6-8nt_m8 | dyads_m5 | 0.884 | 0.558 | 12 | 19 | 12 | 19 | 0.6316 | 1.0000 | 0.6316 | D | 0 |
| oligos_6-8nt_m9 | positions_6-8nt_m6 | oligos_6-8nt_m9 | positions_6-8nt_m6 | 0.760 | 0.557 | 14 | 12 | 11 | 15 | 0.7333 | 0.7857 | 0.9167 | D | -1 |
| positions_6-8nt_m6 | oligos_6-8nt_m9 | positions_6-8nt_m6 | oligos_6-8nt_m9 | 0.760 | 0.557 | 12 | 14 | 11 | 15 | 0.7333 | 0.9167 | 0.7857 | D | 1 |
| dyads_m5 | positions_6-8nt_m6 | dyads_m5 | positions_6-8nt_m6 | 0.805 | 0.508 | 19 | 12 | 12 | 19 | 0.6316 | 0.6316 | 1.0000 | D | 1 |
| positions_6-8nt_m6 | dyads_m5 | positions_6-8nt_m6 | dyads_m5 | 0.805 | 0.508 | 12 | 19 | 12 | 19 | 0.6316 | 1.0000 | 0.6316 | D | -1 |
| dyads_m9 | dyads_m2 | dyads_m9 | dyads_m2 | 0.726 | 0.442 | 20 | 17 | 14 | 23 | 0.6087 | 0.7000 | 0.8235 | D | -3 |
| dyads_m2 | dyads_m9 | dyads_m2 | dyads_m9 | 0.726 | 0.442 | 17 | 20 | 14 | 23 | 0.6087 | 0.8235 | 0.7000 | D | 3 |
| dyads_m5 | oligos_6-8nt_m7 | dyads_m5 | oligos_6-8nt_m7 | 0.747 | 0.433 | 19 | 11 | 11 | 19 | 0.5789 | 0.5789 | 1.0000 | D | 2 |
| oligos_6-8nt_m7 | dyads_m5 | oligos_6-8nt_m7 | dyads_m5 | 0.747 | 0.433 | 11 | 19 | 11 | 19 | 0.5789 | 1.0000 | 0.5789 | D | -2 |
| dyads_m5 | oligos_6-8nt_m3 | dyads_m5 | oligos_6-8nt_m3 | 0.719 | 0.416 | 19 | 11 | 11 | 19 | 0.5789 | 0.5789 | 1.0000 | D | 0 |
| oligos_6-8nt_m3 | dyads_m5 | oligos_6-8nt_m3 | dyads_m5 | 0.719 | 0.416 | 11 | 19 | 11 | 19 | 0.5789 | 1.0000 | 0.5789 | D | 0 |
Host name rsat Job started 2026-01-25.184440 Job done 2026-01-25.184454 Seconds 0.75 user 0.76 system 0.47 cuser 11.64 ; csystem 1.87