One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/positions_6-8nt_m1/peak-motifs_positions_6-8nt_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/positions_6-8nt_m1/peak-motifs_positions_6-8nt_m1_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: positions_6-8nt_m1_shift1 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| positions_6-8nt_m1_shift1 (positions_6-8nt_m1) |
 |
|
|
; positions_6-8nt_m1; m=0 (reference); ncol1=10; shift=1; ncol=11; -wyATTTTCww
; Alignment reference
a 0 76 51 279 0 11 7 4 0 87 80
c 0 61 76 0 0 0 1 0 279 61 61
g 0 56 57 0 0 0 1 0 0 58 57
t 0 86 95 0 279 268 270 275 0 73 81
|
| dl_shift0 (dl) |
 |
|
|
; positions_6-8nt_m1 versus dl; m=1/1; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.654598; kkrwTTTyCym
; cor=; Ncor=
a 0 2 20 13 2 0 2 0 1 0 12
c 1 3 0 4 0 1 4 21 36 16 17
g 22 21 18 3 2 3 1 0 0 9 8
t 15 12 0 18 34 34 31 17 1 13 1
|