/var/www/html/rsat/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila
 Matrices
	file1	26 matrices	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.184326_2026-01-25.184326_ptOhrJ/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	10	279
		file1	2	10	108
		file1	3	10	156
		file1	4	10	235
		file1	5	10	80
		file1	6	12	417
		file1	7	12	603
		file1	8	16	170
		file1	9	11	449
		file1	10	13	526
		file1	11	15	287
		...	16 more matrices
	file2	41 matrices	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
		file2		1		6		45.00005
		file2		2		6		18
		file2		3		6		14
		file2		4		8		49.00004
		file2		5		8		18.00005
		file2		6		7		21
		file2		7		11		16
		file2		8		8		8
		file2		9		7		11
		file2		10		8		10
		file2		11		9		13
		...	31 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6-8nt_m4 Trl oligos_6-8nt_m4 Trl 0.747 0.747 13 13 13 13 1.0000 1.0000 1.0000 R 0
positions_6-8nt_m1 dl positions_6-8nt_m1 dl 0.720 0.655 10 11 10 11 0.9091 1.0000 0.9091 D -1
positions_6-8nt_m4 brk positions_6-8nt_m4 brk 0.903 0.632 10 7 7 10 0.7000 0.7000 1.0000 R 2
positions_6-8nt_m3 bcd positions_6-8nt_m3 bcd 0.781 0.625 10 8 8 10 0.8000 0.8000 1.0000 D 1
dyads_m2 Trl dyads_m2 Trl 0.805 0.616 17 13 13 17 0.7647 0.7647 1.0000 D 0
positions_6-8nt_m6 hb positions_6-8nt_m6 hb 0.779 0.585 12 9 9 12 0.7500 0.7500 1.0000 D 0
oligos_6-8nt_m8 br-Z4 oligos_6-8nt_m8 br-Z4 0.811 0.541 12 8 8 12 0.6667 0.6667 1.0000 R 3
oligos_6-8nt_m7 br-Z1 oligos_6-8nt_m7 br-Z1 0.706 0.514 11 8 8 11 0.7273 0.7273 1.0000 D 1
positions_6-8nt_m3 Antp positions_6-8nt_m3 Antp 0.842 0.505 10 6 6 10 0.6000 0.6000 1.0000 R 4
oligos_6-8nt_m7 hb oligos_6-8nt_m7 hb 0.744 0.496 11 9 8 12 0.6667 0.7273 0.8889 D -1
dyads_m4 brk dyads_m4 brk 0.841 0.491 12 7 7 12 0.5833 0.5833 1.0000 D 0
dyads_m4 Med dyads_m4 Med 0.711 0.457 12 11 9 14 0.6429 0.7500 0.8182 D 3
positions_6-8nt_m3 abd-A positions_6-8nt_m3 abd-A 0.757 0.454 10 6 6 10 0.6000 0.6000 1.0000 R 3
positions_6-8nt_m3 Ubx positions_6-8nt_m3 Ubx 0.745 0.447 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6-8nt_m7 pan oligos_6-8nt_m7 pan 0.817 0.446 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_6-8nt_m8 Antp oligos_6-8nt_m8 Antp 0.887 0.443 12 6 6 12 0.5000 0.5000 1.0000 D 5
oligos_6-8nt_m8 zen oligos_6-8nt_m8 zen 0.874 0.437 12 6 6 12 0.5000 0.5000 1.0000 D 1
oligos_6-8nt_m7 zen oligos_6-8nt_m7 zen 0.794 0.433 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_6-8nt_m8 abd-A oligos_6-8nt_m8 abd-A 0.853 0.426 12 6 6 12 0.5000 0.5000 1.0000 D 2
oligos_6-8nt_m8 br-Z2 oligos_6-8nt_m8 br-Z2 0.716 0.418 12 7 7 12 0.5833 0.5833 1.0000 R 3
positions_6-8nt_m6 zen positions_6-8nt_m6 zen 0.829 0.414 12 6 6 12 0.5000 0.5000 1.0000 D 0
positions_6-8nt_m6 pan positions_6-8nt_m6 pan 0.826 0.413 12 6 6 12 0.5000 0.5000 1.0000 D 4
positions_6-8nt_m3 prd positions_6-8nt_m3 prd 0.802 0.401 10 8 6 12 0.5000 0.6000 0.7500 R 4
oligos_6-8nt_m9 hb oligos_6-8nt_m9 hb 0.751 0.401 14 9 8 15 0.5333 0.5714 0.8889 D -1 
 Host name	rsat
 Job started	2026-01-25.184510
 Job done	2026-01-25.184515
 Seconds	0.39
	user	0.39
	system	0.18
	cuser	4.21
;	csystem	0.74