position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title IDR-final-centered -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 511 Sum of sequence lengths 102711 Min sequence length 0 Max sequence length 201 Average sequence length 201 Possible positions 102711 Oligonucleotide statistics: Total occurrences 102608 Position interval parameters: Position interval 20 Number of windows 11 Total positions 102711 Degrees of freedom 10 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -6 [-119,-100] -109.5 511 511 2 -5 [-99,-80] -89.5 511 10220 3 -4 [-79,-60] -69.5 511 10220 4 -3 [-59,-40] -49.5 511 10220 5 -2 [-39,-20] -29.5 511 10220 6 -1 [-19,0] -9.5 511 10220 7 0 [1,20] 10.5 511 10220 8 1 [21,40] 30.5 511 10220 9 2 [41,60] 50.5 511 10220 10 3 [61,80] 70.5 511 10220 11 4 [81,100] 90.5 511 10220 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -109.5 occurrences in window 1 [-119,-100] 11 -89.5 occurrences in window 2 [-99,-80] 12 -69.5 occurrences in window 3 [-79,-60] 13 -49.5 occurrences in window 4 [-59,-40] 14 -29.5 occurrences in window 5 [-39,-20] 15 -9.5 occurrences in window 6 [-19,0] 16 10.5 occurrences in window 7 [1,20] 17 30.5 occurrences in window 8 [21,40] 18 50.5 occurrences in window 9 [41,60] 19 70.5 occurrences in window 10 [61,80] 20 90.5 occurrences in window 11 [81,100]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 26860 | 10.6 | 10 | 3.9e-01 | 1.5 | -0.19 | 1 | 131 | 2671 | 2743 | 2705 | 2706 | 2669 | 2651 | 2706 | 2557 | 2606 | 2715 |
| c | c | 24540 | 6.7 | 10 | 7.5e-01 | 3 | -0.48 | 2 | 121 | 2474 | 2470 | 2491 | 2453 | 2437 | 2410 | 2354 | 2471 | 2462 | 2397 |
| g | g | 24292 | 6.7 | 10 | 7.5e-01 | 3 | -0.48 | 3 | 137 | 2389 | 2372 | 2386 | 2368 | 2466 | 2428 | 2429 | 2460 | 2423 | 2434 |
| a | a | 26916 | 5.4 | 10 | 8.6e-01 | 3.5 | -0.54 | 4 | 122 | 2686 | 2635 | 2626 | 2673 | 2640 | 2717 | 2711 | 2712 | 2720 | 2674 |
Host name rsat Job started 2026-01-25.201732 Job done 2026-01-25.201732 Seconds 0.61 user 0.61 system 0.02 cuser 0.01 ; csystem 0