One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: dyads_m10_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m10_shift0 (dyads_m10) |
 |
|
|
; dyads_m10; m=0 (reference); ncol1=23; shift=0; ncol=23; agrGAGaGrGAGAGAGAGAGaga
; Alignment reference
a 91 30 91 14 153 12 112 14 106 7 155 4 155 8 158 9 156 8 150 17 135 33 99
c 34 31 30 11 11 5 26 8 24 13 22 11 20 8 17 8 23 8 23 10 31 22 35
g 49 123 58 166 22 177 24 172 54 173 16 179 14 179 15 180 9 180 17 166 26 133 45
t 27 17 22 10 15 7 39 7 17 8 8 7 12 6 11 4 13 5 11 8 9 13 22
|
| Trl_rc_shift10 (Trl_rc) |
 |
|
|
; dyads_m10 versus Trl_rc; m=1/1; ncol2=13; w=0; offset=10; strand=R; shift=10; score=0.484208; ----------agaGaGAGmrmaA
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 0 0 42 17 46 7 50 11 62 0 40 26 30 41 57
c 0 0 0 0 0 0 0 0 0 0 14 9 6 1 9 8 11 5 27 10 24 13 0
g 0 0 0 0 0 0 0 0 0 0 3 47 16 56 12 56 0 72 3 41 19 8 10
t 0 0 0 0 0 0 0 0 0 0 18 4 9 13 6 2 4 0 7 0 4 15 10
|