One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: dyads_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m2_shift0 (dyads_m2) |
 |
|
|
; dyads_m2; m=0 (reference); ncol1=18; shift=0; ncol=18; ctCTCTCTCTCTCTCtct
; Alignment reference
a 43 38 14 16 17 17 10 23 7 22 10 22 15 21 14 44 29 56
c 240 58 322 30 330 28 346 23 340 32 337 19 331 35 321 68 254 76
g 44 89 23 65 17 47 13 48 18 42 14 52 18 39 19 84 45 58
t 57 199 25 273 20 292 15 290 19 288 23 291 20 289 30 188 56 194
|
| Trl_shift3 (Trl) |
 |
|
|
; dyads_m2 versus Trl; m=1/1; ncol2=13; w=0; offset=3; strand=D; shift=3; score=0.592713; ---TtkykCTCtCtct--
; cor=; Ncor=
a 0 0 0 10 15 4 0 7 0 4 2 6 13 9 4 18 0 0
c 0 0 0 10 8 19 41 3 72 0 56 12 56 16 47 3 0 0
g 0 0 0 0 13 24 10 27 5 11 8 9 1 6 9 14 0 0
t 0 0 0 57 41 30 26 40 0 62 11 50 7 46 17 42 0 0
|