One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/dyads_m4/peak-motifs_dyads_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/dyads_m4/peak-motifs_dyads_m4_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: dyads_m4_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m4_shift0 (dyads_m4) |
 |
|
|
; dyads_m4; m=0 (reference); ncol1=12; shift=0; ncol=12; gyCGCCGCCGmc
; Alignment reference
a 53 36 8 6 8 10 2 12 6 16 59 47
c 43 80 198 4 208 204 2 198 208 7 98 80
g 83 57 10 222 10 2 228 8 4 201 32 52
t 56 62 19 3 9 19 3 17 17 11 46 56
|
| brk_shift0 (brk) |
 |
|
|
; dyads_m4 versus brk; m=1/2; ncol2=7; w=0; offset=0; strand=D; shift=0; score=0.477766; rGCGCCr-----
; cor=; Ncor=
a 4.4 2.2 0 0 0 0 5.5 0 0 0 0 0
c 0 0 9.9 0 11 11 0 0 0 0 0 0
g 6.6 8.8 0 9.9 0 0 5.5 0 0 0 0 0
t 0 0 1.1 1.1 0 0 0 0 0 0 0 0
|
| Med_shift3 (Med) |
 |
|
|
; dyads_m4 versus Med; m=2/2; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.460207; ---sCmssCsmm
; cor=; Ncor=
a 0 0 0 1 0 5 0 0 0 0 3 4
c 0 0 0 2 8 3 3 4 7 3 5 4
g 0 0 0 5 0 0 4 4 1 5 0 0
t 0 0 0 0 0 0 1 0 0 0 0 0
|