One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/dyads_m6/peak-motifs_dyads_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/dyads_m6/peak-motifs_dyads_m6_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: dyads_m6_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m6_shift0 (dyads_m6) |
 |
|
|
; dyads_m6; m=0 (reference); ncol1=22; shift=0; ncol=22; agrGAGAGrGAGAGAGAGAGag
; Alignment reference
a 125 36 113 18 195 22 190 19 129 8 189 9 192 9 186 16 189 14 173 27 127 40
c 39 40 32 12 17 8 22 10 34 17 25 14 24 10 24 14 31 13 42 17 46 32
g 59 149 83 209 25 212 20 213 68 217 19 220 20 223 25 213 14 217 18 191 59 154
t 27 25 22 11 13 8 18 8 19 8 17 7 14 8 15 7 16 6 17 15 18 24
|
| Trl_rc_shift8 (Trl_rc) |
 |
|
|
; dyads_m6 versus Trl_rc; m=1/1; ncol2=13; w=0; offset=8; strand=R; shift=8; score=0.484677; --------agaGaGAGmrmaA-
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 42 17 46 7 50 11 62 0 40 26 30 41 57 0
c 0 0 0 0 0 0 0 0 14 9 6 1 9 8 11 5 27 10 24 13 0 0
g 0 0 0 0 0 0 0 0 3 47 16 56 12 56 0 72 3 41 19 8 10 0
t 0 0 0 0 0 0 0 0 18 4 9 13 6 2 4 0 7 0 4 15 10 0
|