One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/dyads_m8/peak-motifs_dyads_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/dyads_m8/peak-motifs_dyads_m8_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: dyads_m8_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m8_shift0 (dyads_m8) |
 |
|
|
; dyads_m8; m=0 (reference); ncol1=22; shift=0; ncol=22; agrGAGAGAGAGmGAGAGaGag
; Alignment reference
a 142 38 142 29 198 25 211 17 211 12 221 12 146 15 216 16 222 14 184 32 140 40
c 44 47 32 23 28 12 33 10 30 13 25 12 85 11 29 13 39 18 52 21 63 35
g 67 170 85 219 36 235 25 248 25 255 21 255 28 254 25 250 12 241 33 216 53 183
t 32 30 26 14 23 13 16 10 19 5 18 6 26 5 15 6 12 12 16 16 29 27
|
| Trl_rc_shift4 (Trl_rc) |
 |
|
|
; dyads_m8 versus Trl_rc; m=1/1; ncol2=13; w=0; offset=4; strand=R; shift=4; score=0.492951; ----agaGaGAGmrmaA-----
; cor=; Ncor=
a 0 0 0 0 42 17 46 7 50 11 62 0 40 26 30 41 57 0 0 0 0 0
c 0 0 0 0 14 9 6 1 9 8 11 5 27 10 24 13 0 0 0 0 0 0
g 0 0 0 0 3 47 16 56 12 56 0 72 3 41 19 8 10 0 0 0 0 0
t 0 0 0 0 18 4 9 13 6 2 4 0 7 0 4 15 10 0 0 0 0 0
|