One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m5_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv3_m5_shift0 (oligos_6nt_mkv3_m5) |
 |
|
|
; oligos_6nt_mkv3_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; hyACTCAChmy
; Alignment reference
a 29 22 103 1 3 1 99 1 31 29 28
c 34 43 3 111 3 109 3 110 37 45 29
g 22 16 0 2 0 1 0 3 12 16 21
t 30 34 9 1 109 4 13 1 35 25 37
|
| z_rc_shift1 (z_rc) |
 |
|
|
; oligos_6nt_mkv3_m5 versus z_rc; m=1/1; ncol2=6; w=0; offset=1; strand=R; shift=1; score=0.50615; -CaCTCA----
; cor=; Ncor=
a 0 5.12195 24.5854 0 0 0 29.7073 0 0 0 0
c 0 30.7317 0 42 0 42 3.07317 0 0 0 0
g 0 5.12195 10.2439 0 0 0 7.17073 0 0 0 0
t 0 1.02439 7.17073 0 42 0 2.04878 0 0 0 0
|