One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/oligos_6nt_mkv3_m8/peak-motifs_oligos_6nt_mkv3_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/oligos_6nt_mkv3_m8/peak-motifs_oligos_6nt_mkv3_m8_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m8_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv3_m8_shift0 (oligos_6nt_mkv3_m8) |
 |
|
|
; oligos_6nt_mkv3_m8; m=0 (reference); ncol1=10; shift=0; ncol=10; smAACTGArw
; Alignment reference
a 21 31 87 89 0 0 0 94 35 37
c 26 28 0 0 94 0 0 0 11 18
g 29 20 0 0 0 0 94 0 25 13
t 18 15 7 5 0 94 0 0 23 26
|
| ovo_rc_shift1 (ovo_rc) |
 |
|
|
; oligos_6nt_mkv3_m8 versus ovo_rc; m=1/1; ncol2=6; w=0; offset=1; strand=R; shift=1; score=0.444501; -TAACrG---
; cor=; Ncor=
a 0 0 13 11.9167 0 4.33333 0 0 0 0
c 0 1.08333 0 0 13 0 0 0 0 0
g 0 0 0 0.541667 0 6.5 13 0 0 0
t 0 11.9167 0 0.541667 0 2.16667 0 0 0 0
|