One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m5_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv4_m5_shift0 (oligos_7nt_mkv4_m5) |
 |
|
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; oligos_7nt_mkv4_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; caCACrCACac
; Alignment reference
a 65 200 13 396 8 128 18 409 0 211 68
c 237 83 399 10 408 26 409 16 428 66 219
g 64 96 14 7 18 258 9 4 8 78 84
t 77 64 17 30 9 31 7 14 7 88 72
|
| z_rc_shift2 (z_rc) |
 |
|
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; oligos_7nt_mkv4_m5 versus z_rc; m=1/1; ncol2=6; w=0; offset=2; strand=R; shift=2; score=0.404675; --CaCTCA---
; cor=; Ncor=
a 0 0 5.12195 24.5854 0 0 0 29.7073 0 0 0
c 0 0 30.7317 0 42 0 42 3.07317 0 0 0
g 0 0 5.12195 10.2439 0 0 0 7.17073 0 0 0
t 0 0 1.02439 7.17073 0 42 0 2.04878 0 0 0
|