One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/oligos_7nt_mkv4_m6/peak-motifs_oligos_7nt_mkv4_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/oligos_7nt_mkv4_m6/peak-motifs_oligos_7nt_mkv4_m6_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m6_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv4_m6_shift0 (oligos_7nt_mkv4_m6) |
 |
|
|
; oligos_7nt_mkv4_m6; m=0 (reference); ncol1=11; shift=0; ncol=11; yrAACTGAAww
; Alignment reference
a 59 74 240 243 12 13 18 238 226 77 83
c 74 65 15 4 246 10 7 4 9 62 42
g 57 79 7 7 9 15 230 11 19 54 67
t 80 52 8 16 3 232 15 17 16 77 78
|
| ovo_rc_shift1 (ovo_rc) |
 |
|
|
; oligos_7nt_mkv4_m6 versus ovo_rc; m=1/1; ncol2=6; w=0; offset=1; strand=R; shift=1; score=0.416522; -TAACrG----
; cor=; Ncor=
a 0 0 13 11.9167 0 4.33333 0 0 0 0 0
c 0 1.08333 0 0 13 0 0 0 0 0 0
g 0 0 0 0.541667 0 6.5 13 0 0 0 0
t 0 11.9167 0 0.541667 0 2.16667 0 0 0 0 0
|