/var/www/html/rsat/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila
 Matrices
	file1	27 matrices	$RSAT/public_html/tmp/www-data/2026/01/25/peak-motifs.2026-01-25.201729_2026-01-25.201729_P12xBT/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	11	274
		file1	2	13	345
		file1	3	11	462
		file1	4	10	202
		file1	5	11	115
		file1	6	10	111
		file1	7	11	606
		file1	8	10	94
		file1	9	10	248
		file1	10	12	152
		file1	11	10	117
		...	17 more matrices
	file2	41 matrices	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
		file2		1		6		45.00005
		file2		2		6		18
		file2		3		6		14
		file2		4		8		49.00004
		file2		5		8		18.00005
		file2		6		7		21
		file2		7		11		16
		file2		8		8		8
		file2		9		7		11
		file2		10		8		10
		file2		11		9		13
		...	31 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m3 Trl oligos_7nt_mkv4_m3 Trl 0.857 0.673 12 13 11 14 0.7857 0.9167 0.8462 R 1
oligos_6nt_mkv3_m3 Trl oligos_6nt_mkv3_m3 Trl 0.758 0.642 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_6nt_mkv3_m9 br-Z4 oligos_6nt_mkv3_m9 br-Z4 0.775 0.620 10 8 8 10 0.8000 0.8000 1.0000 R 2
oligos_6nt_mkv3_m6 en oligos_6nt_mkv3_m6 en 0.760 0.608 10 8 8 10 0.8000 0.8000 1.0000 R 1
dyads_m2 Trl dyads_m2 Trl 0.821 0.593 18 13 13 18 0.7222 0.7222 1.0000 D 3
oligos_6nt_mkv3_m6 sd oligos_6nt_mkv3_m6 sd 0.760 0.526 10 12 9 13 0.6923 0.9000 0.7500 R 1
oligos_6nt_mkv3_m5 z oligos_6nt_mkv3_m5 z 0.928 0.506 11 6 6 11 0.5455 0.5455 1.0000 R 1
oligos_6nt_mkv3_m9 br-Z2 oligos_6nt_mkv3_m9 br-Z2 0.716 0.502 10 7 7 10 0.7000 0.7000 1.0000 R 2
dyads_m8 Trl dyads_m8 Trl 0.834 0.493 22 13 13 22 0.5909 0.5909 1.0000 R 4
oligos_6nt_mkv3_m9 abd-A oligos_6nt_mkv3_m9 abd-A 0.810 0.486 10 6 6 10 0.6000 0.6000 1.0000 D 1
oligos_6nt_mkv3_m9 Antp oligos_6nt_mkv3_m9 Antp 0.808 0.485 10 6 6 10 0.6000 0.6000 1.0000 D 4
dyads_m6 Trl dyads_m6 Trl 0.820 0.485 22 13 13 22 0.5909 0.5909 1.0000 R 8
oligos_6nt_mkv3_m6 zen oligos_6nt_mkv3_m6 zen 0.808 0.485 10 6 6 10 0.6000 0.6000 1.0000 D 2
dyads_m10 Trl dyads_m10 Trl 0.857 0.484 23 13 13 23 0.5652 0.5652 1.0000 R 10
oligos_6nt_mkv3_m9 zen oligos_6nt_mkv3_m9 zen 0.804 0.482 10 6 6 10 0.6000 0.6000 1.0000 D 0
dyads_m4 brk dyads_m4 brk 0.819 0.478 12 7 7 12 0.5833 0.5833 1.0000 D 0
dyads_m4 Med dyads_m4 Med 0.716 0.460 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_6nt_mkv3_m3 z oligos_6nt_mkv3_m3 z 0.821 0.448 11 6 6 11 0.5455 0.5455 1.0000 D 1
oligos_6nt_mkv3_m8 ovo oligos_6nt_mkv3_m8 ovo 0.741 0.445 10 6 6 10 0.6000 0.6000 1.0000 R 1
oligos_6nt_mkv3_m9 vvl oligos_6nt_mkv3_m9 vvl 0.740 0.444 10 6 6 10 0.6000 0.6000 1.0000 R 2
oligos_6nt_mkv3_m6 ap oligos_6nt_mkv3_m6 ap 0.703 0.422 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_7nt_mkv4_m6 ovo oligos_7nt_mkv4_m6 ovo 0.764 0.417 11 6 6 11 0.5455 0.5455 1.0000 R 1
oligos_7nt_mkv4_m3 z oligos_7nt_mkv4_m3 z 0.815 0.408 12 6 6 12 0.5000 0.5000 1.0000 D 1
oligos_7nt_mkv4_m5 z oligos_7nt_mkv4_m5 z 0.742 0.405 11 6 6 11 0.5455 0.5455 1.0000 R 2 
 Host name	rsat
 Job started	2026-01-25.201902
 Job done	2026-01-25.201908
 Seconds	0.37
	user	0.37
	system	0.23
	cuser	4.49
;	csystem	0.75