RSAT - compare-matrices result

Analysis: result (26/02/2026 14:11)

Command: compare-matrices -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/02/26/compare-matrices_2026-02-26.141129_glP3y4/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_plants_non-redundant_pfms_transfac.txt -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/02/26/compare-matrices_2026-02-26.141129_glP3y4/compare-matrices.tab

Input files

TypeFile
file1compare-matrices_query_matrices.transfac
file2../../../../../../motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_plants_non-redundant_pfms_transfac.txt

Output files

TypeFile
match_table_txtcompare-matrices.tab
match_table_htmlcompare-matrices.html
alignments_1toncompare-matrices_alignments_1ton.tab
alignments_1ton_htmlcompare-matrices_alignments_1ton.html

Directories

TypeDirectory
output.
aligned_logoscompare-matrices_aligned_logos