; matrix-from-patterns  -v 1 -logo -seq $RSAT/public_html/tmp/www-data/2026/02/26/retrieve-seq_2026-02-26.172728_hJ5DoM.fasta.fasta -format fasta -asmb $RSAT/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA.asmb -min_weight 5 -flanks 2 -max_asmb_nb 20 -cluster none -uth Pval 0.00025 -bginput -markov 0 -o $RSAT/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA_pssm
; Input files
;	assembly	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA.asmb
;	sequence	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/retrieve-seq_2026-02-26.172728_hJ5DoM.fasta.fasta
; Output files
;	count_matrices_tf	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA_pssm_count_matrices.tf
;	gibbs_matrices	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA_pssm_gibbs_matrices.txt
;	err	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA_pssm_err.txt
;	logo_basename	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA_pssm_count_matrices_logo
;	sig_sites	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA_pssm_sig_sites.ft
;	sig_matrices	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA_pssm_sig_matrices.tf
;	sig_matrices_split	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA_pssm_sig_matrices_split_matrix_list.tab
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA_pssm
;	count_matrices	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA_pssm_count_matrices.txt
;	log	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA_pssm_log.txt
;	assembly	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA.asmb
;	links	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/oligo-analysis_2026-02-26.173648_2n0cbA_pssm_count_matrices_links.txt
; Number of assemblies	0
; Number of assembled patterns	0
; Host name	rsat
; Job started	2026-02-26.173652
; Job done	2026-02-26.173652
; Seconds	0.07
;	user	0.07
;	system	0.01
;	cuser	0
;	csystem	0