; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	14	8	4	1	33	2	0	32	33	5	1	12	5	11	13	11
c	11	6	4	25	1	34	35	0	1	30	30	20	25	17	10	16
g	2	3	0	3	0	0	0	0	2	1	2	3	2	6	4	2
t	9	19	28	7	2	0	1	4	0	0	3	1	4	2	9	7
//
; Sites	36
>site_0
ATTAACCAACACACCA
>site_1
ACACACCTACTCCCAT
>site_2
TCTCACCAACCGCGAA
>site_3
AGCCACCAGCCACGAC
>site_4
TCTCACCAACCGCAAA
>site_5
AGCCACCAGCCACGAC
>site_6
ATAGACCAACCCGCCA
>site_7
CTTCACCAAACACTTT
>site_8
CTTTACCTACCACCAT
>site_9
CAACACCAAGCCCCAC
>site_10
ATTCACCAACTCCCAC
>site_11
CTTCACCAAACTCATC
>site_12
CTTCACCAACCCCACC
>site_13
TTCCACCAAAGCCCAA
>site_14
CTTCACCAACCCACTC
>site_15
TCTTACCAAACCCATT
>site_16
TATTTCCAACCCTACC
>site_17
TATTACCAACGACCAC
>site_18
TTTCACCAACCCCACC
>site_19
CATCCCTAACCACCTC
>site_20
CATGACCAACCCAAGG
>site_21
ATTGACCAACCCACGG
>site_22
TAACAACAACCACCAA
>site_23
GTTTACCAACCCCGGA
>site_24
CTTCACCTACCGCCCC
>site_25
AGTTACCAACTCTCTC
>site_26
TCTCACCAACCCCAAA
>site_27
CTTCTCCACCCCACAA
>site_28
GTTCACCAACCCCCTC
>site_29
ATTCACCTACCACGGT
>site_30
CTCCACCAACCATGCC
>site_31
ACTCACCAACCAGTTC
>site_32
ATTCAACAACCACATA
>site_33
AATCACCAACCCTACT
>site_34
ATTTACCAACCCCCCT
>site_35
AATCACCAAACACACA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1_rc.png
;
a	45	39	43	107	107	107	107	0	107	49	50
c	16	22	23	0	0	0	0	107	0	12	11
g	11	15	23	0	0	0	0	0	0	13	12
t	35	31	18	0	0	0	0	0	0	33	34
//
; Sites	107
>site_0
GTCAAAACAGG
>site_1
GAAAAAACAAT
>site_2
TCCAAAACATA
>site_3
ATGAAAACAAA
>site_4
AACAAAACACT
>site_5
ACAAAAACAAA
>site_6
ACAAAAACAAA
>site_7
AAAAAAACAGG
>site_8
AGCAAAACATT
>site_9
GGTAAAACATT
>site_10
AGAAAAACAAA
>site_11
CTCAAAACATA
>site_12
ACCAAAACAAA
>site_13
TCAAAAACAAA
>site_14
CAAAAAACACA
>site_15
AAGAAAACAAA
>site_16
GATAAAACAAA
>site_17
AAAAAAACAGT
>site_18
AGTAAAACAGT
>site_19
TCCAAAACAAT
>site_20
TGCAAAACATT
>site_21
AAAAAAACACG
>site_22
TTCAAAACAAA
>site_23
TTTAAAACATA
>site_24
CAGAAAACAAA
>site_25
AAAAAAACATA
>site_26
GTAAAAACAGT
>site_27
GGAAAAACATA
>site_28
ATCAAAACATT
>site_29
TCCAAAACAAT
>site_30
CACAAAACAAA
>site_31
GAAAAAACACT
>site_32
AGGAAAACAAT
>site_33
TCGAAAACAAA
>site_34
ATGAAAACATA
>site_35
CTCAAAACAAA
>site_36
TTTAAAACAAA
>site_37
TATAAAACACG
>site_38
TTGAAAACATG
>site_39
GATAAAACAGG
>site_40
AAAAAAACATC
>site_41
AAAAAAACAGA
>site_42
TGTAAAACAAG
>site_43
TTAAAAACAAA
>site_44
CCAAAAACAGA
>site_45
TCCAAAACAGA
>site_46
TTAAAAACAGT
>site_47
TAAAAAACAAA
>site_48
TTGAAAACAAG
>site_49
ATGAAAACAAT
>site_50
GGAAAAACATT
>site_51
AAAAAAACAAT
>site_52
AAAAAAACAGT
>site_53
TTAAAAACATT
>site_54
CTAAAAACAAA
>site_55
AACAAAACAAA
>site_56
CCTAAAACAAA
>site_57
TAAAAAACATA
>site_58
CTCAAAACAAA
>site_59
TTCAAAACATA
>site_60
AATAAAACACT
>site_61
AAGAAAACAAT
>site_62
TTCAAAACATT
>site_63
CAAAAAACAAA
>site_64
ACAAAAACAAA
>site_65
CAAAAAACATT
>site_66
AATAAAACATT
>site_67
ATTAAAACAGT
>site_68
AAAAAAACATT
>site_69
AGAAAAACAAT
>site_70
CGAAAAACAAA
>site_71
CTCAAAACACT
>site_72
ACGAAAACAAG
>site_73
AAAAAAACAAT
>site_74
ACAAAAACAGT
>site_75
GACAAAACAAA
>site_76
TAAAAAACATT
>site_77
AACAAAACAAC
>site_78
CTGAAAACACC
>site_79
TGGAAAACAAA
>site_80
AATAAAACAAA
>site_81
AAGAAAACAAA
>site_82
TCAAAAACAAA
>site_83
AAGAAAACAAA
>site_84
TTGAAAACATT
>site_85
ATAAAAACATA
>site_86
GGGAAAACAAT
>site_87
TAGAAAACAAT
>site_88
TTGAAAACATG
>site_89
ACGAAAACAAA
>site_90
AAAAAAACAAA
>site_91
AAAAAAACAAA
>site_92
TGGAAAACACC
>site_93
TTTAAAACACC
>site_94
TTTAAAACACC
>site_95
CTTAAAACATC
>site_96
TTGAAAACATC
>site_97
TGTAAAACATA
>site_98
ACAAAAACATG
>site_99
ATAAAAACATC
>site_100
AAGAAAACACA
>site_101
TATAAAACATC
>site_102
TCAAAAACATA
>site_103
TCAAAAACATG
>site_104
CCAAAAACATA
>site_105
ACCAAAACAAA
>site_106
ACCAAAACAAC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m2_rc.png
;
a	13	15	0	46	0	0	0	41	12	18
c	12	8	49	0	3	0	50	3	8	6
g	5	17	0	2	0	50	0	2	4	14
t	20	10	1	2	47	0	0	4	26	12
//
; Sites	50
>site_0
TGCATGCATT
>site_1
TGCATGCACA
>site_2
CACATGCAAA
>site_3
GTCATGCAAA
>site_4
TGCATGCATA
>site_5
TGCATGCATA
>site_6
TACATGCCAT
>site_7
GTCATGCAAA
>site_8
AACATGCAAA
>site_9
ATCATGCTCT
>site_10
AGCATGCATG
>site_11
CACATGCATG
>site_12
CCCATGCTAC
>site_13
GGCACGCAGC
>site_14
CTCATGCAGT
>site_15
TATATGCATA
>site_16
ACCATGCCTA
>site_17
ACCATGCCTA
>site_18
TACTTGCATG
>site_19
TGCATGCAAG
>site_20
TGCATGCACT
>site_21
ACCATGCTTA
>site_22
CACATGCATA
>site_23
TGCATGCAAT
>site_24
TGCATGCAAC
>site_25
GACATGCATT
>site_26
TGCATGCGTC
>site_27
CGCATGCACC
>site_28
AGCGTGCATA
>site_29
ACCATGCATG
>site_30
TTCATGCATG
>site_31
TTCATGCATA
>site_32
AGCACGCAGG
>site_33
TACATGCAAG
>site_34
TACACGCAAT
>site_35
TCCATGCATA
>site_36
CTCGTGCATG
>site_37
TGCATGCACG
>site_38
TGCATGCATT
>site_39
CTCATGCGTT
>site_40
GCCATGCACC
>site_41
ACCATGCACA
>site_42
CACATGCACT
>site_43
CACATGCATG
>site_44
TTCATGCATG
>site_45
CACATGCTAT
>site_46
AGCTTGCAGA
>site_47
ATCATGCATA
>site_48
CACATGCATG
>site_49
AACATGCATG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m3_rc.png
;
a	12	10	2	1	1	2	15	0	1	2	8	11
c	5	5	28	32	30	27	4	32	1	30	3	12
g	5	5	2	0	0	1	1	0	1	0	4	1
t	12	14	2	1	3	4	14	2	31	2	19	10
//
; Sites	34
>site_0
TTCCCCTCTTTC
>site_1
GTCCCCACTAAT
>site_2
ATCCCCTCACTT
>site_3
AGCCCCACTCAC
>site_4
GGGCCCACTCTT
>site_5
CAACCCACTCTT
>site_6
TCCCACTCTCTA
>site_7
CCTCCCACTCTC
>site_8
ACCCCTCCTCGC
>site_9
TTCCCCACGCAC
>site_10
TTCCCCACTCGC
>site_11
CAACCCCCTCCC
>site_12
ACCCCCTCCCTA
>site_13
GACCCCTCTCAA
>site_14
GTCCTCTCTCTC
>site_15
TTTCCCACTCTT
>site_16
TTCCCTTCTCTA
>site_17
CACCCCTTTCGT
>site_18
TTCTCCACTCTA
>site_19
AACCCTACTCAC
>site_20
AACCCTTCTCTC
>site_21
ATCCCCTCTCCC
>site_22
TGCCCCTCTCCA
>site_23
CCCCCCTCTATA
>site_24
AACCCCCCTCTA
>site_25
TTCCTCTCTCTC
>site_26
ATCACCACTCTA
>site_27
GGCCTCCCTCAG
>site_28
TTCCCCACTTGA
>site_29
AACCCGGCTCTT
>site_30
TTCCCCATTCTT
>site_31
TGGCCCTCTCTT
>site_32
AACCCAACTCAT
>site_33
AACCCAACTCAA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m4_rc.png
;
a	19	20	5	3	0	4	2	2	7	24	26
c	43	17	82	4	86	1	81	2	78	11	33
g	14	7	4	1	1	2	3	1	4	6	10
t	19	51	4	87	8	88	9	90	6	54	26
//
; Sites	95
>site_0
CACTCTTTCAT
>site_1
AACTCTCTTTT
>site_2
CCCTCTTTCTG
>site_3
TTCTCTATCAA
>site_4
GTCTTTCTCAC
>site_5
TTCTCACTCTT
>site_6
ATATCTCTCGC
>site_7
ATCTCTCGCTA
>site_8
TGCTCTGTCTT
>site_9
CACTCTCTAAG
>site_10
CCCACTCTCTA
>site_11
CCCTCTGTCCT
>site_12
AACTCTCTCAG
>site_13
GACTCTCTCCC
>site_14
CTCTCTCCCAC
>site_15
AACTCACTCAT
>site_16
AACTCTCTCTA
>site_17
CTCTCTCTACT
>site_18
ACGTCTCTCTC
>site_19
GTCTCTCTCTC
>site_20
CTCTCTCTCTC
>site_21
CTCTCTCTCTC
>site_22
CTCTCTCTCAC
>site_23
CTCTCTCACCA
>site_24
CACTCGCTCTC
>site_25
CTCGCTCTCAA
>site_26
GACTTTCTCAT
>site_27
ACCCCTCTCAA
>site_28
TCCTCTCTCTC
>site_29
CTCTCTCTCAA
>site_30
CACTTTCTCGA
>site_31
TTCTTTCTCTT
>site_32
CAATCTCTCTG
>site_33
ATCTCTCTGTG
>site_34
GGCTCTCACCA
>site_35
TCCTCTCTGTA
>site_36
TTCTCTCTAAG
>site_37
CTTTCTCTCTA
>site_38
CTCTTTCTCTC
>site_39
CTCTCTTTCTC
>site_40
CTCTCTCTTTC
>site_41
CTCTCTCTCTT
>site_42
CTCTCTCTCTC
>site_43
TTCTCTCTCTC
>site_44
CCTTCTCTCTC
>site_45
GTCTCTTTCAC
>site_46
TCCCCTCTCCC
>site_47
CCCTCTCCCAT
>site_48
GCCCCTCTCCA
>site_49
TCCTCTTTCGA
>site_50
GTCTCTCTATA
>site_51
CTGTCTCTCTA
>site_52
GTCTGTCTCTC
>site_53
TGCACTCTCAA
>site_54
TTCTCTCTACA
>site_55
CTTTCTCTCTA
>site_56
CTCTTTCTCTC
>site_57
CACTCTTTCTC
>site_58
TTCTCACTCTT
>site_59
CTCTCTCTCAT
>site_60
GTCTCTCTCTC
>site_61
AAGTCTCTCTC
>site_62
AACTCTCTATA
>site_63
AACTCTCTTGA
>site_64
CTCTCTTTCTT
>site_65
CTCTCTCTTTC
>site_66
CTCTCTCTCTT
>site_67
CTCTCTCTCTC
>site_68
CTCTCTCTCTC
>site_69
TCCTCTCTCTC
>site_70
CGCTTTCTCTT
>site_71
CTCTCTCTTCT
>site_72
TACTCTCTCTT
>site_73
AGATCTCTCTC
>site_74
ATCTCTCTCTG
>site_75
CTCTCTCTGTC
>site_76
CTCTCTGTCTT
>site_77
CACTCTATCGT
>site_78
TTCTCTCTCGG
>site_79
ACTTCTCTCTC
>site_80
GCCTCCCTCAG
>site_81
AAATCTCTCAT
>site_82
TTATCTCTCAT
>site_83
ACCTCTCTGAA
>site_84
TTCTCTTTCAA
>site_85
TACTCGCTCAT
>site_86
GGGTCTCTCTC
>site_87
GTCTCTCTCTA
>site_88
CTCTCTCTACG
>site_89
ATCTTTCTCTA
>site_90
CCCTCTCTTCA
>site_91
GGCCCTCTCTT
>site_92
ATCTCACTCTC
>site_93
CTCACTCTCAT
>site_94
CACTCTTTCTT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m5_rc.png
;
; Host name	rsat
; Job started	2026-02-26.135852
; Job done	2026-02-26.135853
; Seconds	0.17
;	user	0.17
;	system	0.06
;	cuser	1.23
;	csystem	0.18
