position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title list_up1 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 17 Sum of sequence lengths 25280 Min sequence length 0 Max sequence length 1701 Average sequence length 1487 Possible positions 25280 Sequences: # length ID 1 1701 PAL1 2 1701 PAL2 3 1701 CYP73A5 4 1701 4CL1 5 229 4CL2 6 1628 HST 7 1701 CYP98A3 8 1701 CCoAOMT1 9 1701 F6'H1 10 1283 AT1G65450 11 1701 AT3G12900 12 1269 CYP82C4 13 459 UGT73B1 14 1701 AT5G20950 15 1701 ABCG37 16 1701 ATMYB72 17 1701 SYP122 Oligonucleotide statistics: Total occurrences 25044 Position interval parameters: Position interval 20 Number of windows 86 Total positions 25280 Degrees of freedom 85 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -43 [-859,-840] -849.5 12 132 2 -42 [-839,-820] -829.5 12 240 3 -41 [-819,-800] -809.5 13 254 4 -40 [-799,-780] -789.5 13 260 5 -39 [-779,-760] -769.5 13 260 6 -38 [-759,-740] -749.5 13 260 7 -37 [-739,-720] -729.5 13 260 8 -36 [-719,-700] -709.5 13 260 9 -35 [-699,-680] -689.5 13 260 10 -34 [-679,-660] -669.5 13 260 11 -33 [-659,-640] -649.5 14 262 12 -32 [-639,-620] -629.5 15 295 13 -31 [-619,-600] -609.5 15 300 14 -30 [-599,-580] -589.5 15 300 15 -29 [-579,-560] -569.5 15 300 16 -28 [-559,-540] -549.5 15 300 17 -27 [-539,-520] -529.5 15 300 18 -26 [-519,-500] -509.5 15 300 19 -25 [-499,-480] -489.5 15 300 20 -24 [-479,-460] -469.5 15 300 21 -23 [-459,-440] -449.5 15 300 22 -22 [-439,-420] -429.5 15 300 23 -21 [-419,-400] -409.5 15 300 24 -20 [-399,-380] -389.5 15 300 25 -19 [-379,-360] -369.5 15 300 26 -18 [-359,-340] -349.5 15 300 27 -17 [-339,-320] -329.5 15 300 28 -16 [-319,-300] -309.5 15 300 29 -15 [-299,-280] -289.5 15 300 30 -14 [-279,-260] -269.5 15 300 31 -13 [-259,-240] -249.5 15 300 32 -12 [-239,-220] -229.5 16 310 33 -11 [-219,-200] -209.5 16 320 34 -10 [-199,-180] -189.5 16 320 35 -9 [-179,-160] -169.5 16 320 36 -8 [-159,-140] -149.5 16 320 37 -7 [-139,-120] -129.5 16 320 38 -6 [-119,-100] -109.5 17 335 39 -5 [-99,-80] -89.5 17 340 40 -4 [-79,-60] -69.5 17 340 41 -3 [-59,-40] -49.5 17 340 42 -2 [-39,-20] -29.5 17 340 43 -1 [-19,0] -9.5 17 340 44 0 [1,20] 10.5 17 340 45 1 [21,40] 30.5 17 340 46 2 [41,60] 50.5 17 340 47 3 [61,80] 70.5 17 340 48 4 [81,100] 90.5 17 340 49 5 [101,120] 110.5 17 334 50 6 [121,140] 130.5 16 320 51 7 [141,160] 150.5 16 320 52 8 [161,180] 170.5 16 320 53 9 [181,200] 190.5 16 320 54 10 [201,220] 210.5 16 320 55 11 [221,240] 230.5 16 309 56 12 [241,260] 250.5 15 300 57 13 [261,280] 270.5 15 300 58 14 [281,300] 290.5 15 300 59 15 [301,320] 310.5 15 300 60 16 [321,340] 330.5 15 300 61 17 [341,360] 350.5 15 300 62 18 [361,380] 370.5 15 300 63 19 [381,400] 390.5 15 300 64 20 [401,420] 410.5 15 300 65 21 [421,440] 430.5 15 300 66 22 [441,460] 450.5 15 300 67 23 [461,480] 470.5 15 300 68 24 [481,500] 490.5 15 300 69 25 [501,520] 510.5 15 300 70 26 [521,540] 530.5 15 300 71 27 [541,560] 550.5 15 300 72 28 [561,580] 570.5 15 300 73 29 [581,600] 590.5 15 300 74 30 [601,620] 610.5 15 300 75 31 [621,640] 630.5 15 294 76 32 [641,660] 650.5 14 261 77 33 [661,680] 670.5 13 260 78 34 [681,700] 690.5 13 260 79 35 [701,720] 710.5 13 260 80 36 [721,740] 730.5 13 260 81 37 [741,760] 750.5 13 260 82 38 [761,780] 770.5 13 260 83 39 [781,800] 790.5 13 260 84 40 [801,820] 810.5 13 254 85 41 [821,840] 830.5 12 240 86 42 [841,860] 850.5 12 120 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -849.5 occurrences in window 1 [-859,-840] 11 -829.5 occurrences in window 2 [-839,-820] 12 -809.5 occurrences in window 3 [-819,-800] 13 -789.5 occurrences in window 4 [-799,-780] 14 -769.5 occurrences in window 5 [-779,-760] 15 -749.5 occurrences in window 6 [-759,-740] 16 -729.5 occurrences in window 7 [-739,-720] 17 -709.5 occurrences in window 8 [-719,-700] 18 -689.5 occurrences in window 9 [-699,-680] 19 -669.5 occurrences in window 10 [-679,-660] 20 -649.5 occurrences in window 11 [-659,-640] 21 -629.5 occurrences in window 12 [-639,-620] 22 -609.5 occurrences in window 13 [-619,-600] 23 -589.5 occurrences in window 14 [-599,-580] 24 -569.5 occurrences in window 15 [-579,-560] 25 -549.5 occurrences in window 16 [-559,-540] 26 -529.5 occurrences in window 17 [-539,-520] 27 -509.5 occurrences in window 18 [-519,-500] 28 -489.5 occurrences in window 19 [-499,-480] 29 -469.5 occurrences in window 20 [-479,-460] 30 -449.5 occurrences in window 21 [-459,-440] 31 -429.5 occurrences in window 22 [-439,-420] 32 -409.5 occurrences in window 23 [-419,-400] 33 -389.5 occurrences in window 24 [-399,-380] 34 -369.5 occurrences in window 25 [-379,-360] 35 -349.5 occurrences in window 26 [-359,-340] 36 -329.5 occurrences in window 27 [-339,-320] 37 -309.5 occurrences in window 28 [-319,-300] 38 -289.5 occurrences in window 29 [-299,-280] 39 -269.5 occurrences in window 30 [-279,-260] 40 -249.5 occurrences in window 31 [-259,-240] 41 -229.5 occurrences in window 32 [-239,-220] 42 -209.5 occurrences in window 33 [-219,-200] 43 -189.5 occurrences in window 34 [-199,-180] 44 -169.5 occurrences in window 35 [-179,-160] 45 -149.5 occurrences in window 36 [-159,-140] 46 -129.5 occurrences in window 37 [-139,-120] 47 -109.5 occurrences in window 38 [-119,-100] 48 -89.5 occurrences in window 39 [-99,-80] 49 -69.5 occurrences in window 40 [-79,-60] 50 -49.5 occurrences in window 41 [-59,-40] 51 -29.5 occurrences in window 42 [-39,-20] 52 -9.5 occurrences in window 43 [-19,0] 53 10.5 occurrences in window 44 [1,20] 54 30.5 occurrences in window 45 [21,40] 55 50.5 occurrences in window 46 [41,60] 56 70.5 occurrences in window 47 [61,80] 57 90.5 occurrences in window 48 [81,100] 58 110.5 occurrences in window 49 [101,120] 59 130.5 occurrences in window 50 [121,140] 60 150.5 occurrences in window 51 [141,160] 61 170.5 occurrences in window 52 [161,180] 62 190.5 occurrences in window 53 [181,200] 63 210.5 occurrences in window 54 [201,220] 64 230.5 occurrences in window 55 [221,240] 65 250.5 occurrences in window 56 [241,260] 66 270.5 occurrences in window 57 [261,280] 67 290.5 occurrences in window 58 [281,300] 68 310.5 occurrences in window 59 [301,320] 69 330.5 occurrences in window 60 [321,340] 70 350.5 occurrences in window 61 [341,360] 71 370.5 occurrences in window 62 [361,380] 72 390.5 occurrences in window 63 [381,400] 73 410.5 occurrences in window 64 [401,420] 74 430.5 occurrences in window 65 [421,440] 75 450.5 occurrences in window 66 [441,460] 76 470.5 occurrences in window 67 [461,480] 77 490.5 occurrences in window 68 [481,500] 78 510.5 occurrences in window 69 [501,520] 79 530.5 occurrences in window 70 [521,540] 80 550.5 occurrences in window 71 [541,560] 81 570.5 occurrences in window 72 [561,580] 82 590.5 occurrences in window 73 [581,600] 83 610.5 occurrences in window 74 [601,620] 84 630.5 occurrences in window 75 [621,640] 85 650.5 occurrences in window 76 [641,660] 86 670.5 occurrences in window 77 [661,680] 87 690.5 occurrences in window 78 [681,700] 88 710.5 occurrences in window 79 [701,720] 89 730.5 occurrences in window 80 [721,740] 90 750.5 occurrences in window 81 [741,760] 91 770.5 occurrences in window 82 [761,780] 92 790.5 occurrences in window 83 [781,800] 93 810.5 occurrences in window 84 [801,820] 94 830.5 occurrences in window 85 [821,840] 95 850.5 occurrences in window 86 [841,860]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -849.5 | -829.5 | -809.5 | -789.5 | -769.5 | -749.5 | -729.5 | -709.5 | -689.5 | -669.5 | -649.5 | -629.5 | -609.5 | -589.5 | -569.5 | -549.5 | -529.5 | -509.5 | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 | 510.5 | 530.5 | 550.5 | 570.5 | 590.5 | 610.5 | 630.5 | 650.5 | 670.5 | 690.5 | 710.5 | 730.5 | 750.5 | 770.5 | 790.5 | 810.5 | 830.5 | 850.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 4183 | 188.1 | 85 | 9.2e-10 | 3.7e-09 | 8.43 | 1 | 36 | 39 | 44 | 43 | 40 | 42 | 48 | 32 | 38 | 43 | 39 | 39 | 53 | 45 | 45 | 52 | 43 | 39 | 47 | 40 | 37 | 52 | 46 | 32 | 28 | 51 | 41 | 54 | 54 | 48 | 46 | 43 | 43 | 44 | 53 | 59 | 65 | 50 | 42 | 59 | 56 | 52 | 42 | 51 | 51 | 50 | 58 | 47 | 59 | 59 | 56 | 40 | 54 | 48 | 40 | 47 | 49 | 48 | 48 | 47 | 56 | 40 | 47 | 45 | 57 | 62 | 38 | 68 | 44 | 41 | 41 | 44 | 52 | 60 | 56 | 51 | 63 | 58 | 64 | 61 | 52 | 61 | 60 | 68 | 61 | 37 |
| g | g | 3541 | 121.3 | 85 | 6.0e-03 | 0.024 | 1.62 | 2 | 16 | 42 | 30 | 33 | 23 | 32 | 34 | 42 | 38 | 33 | 36 | 37 | 38 | 39 | 43 | 37 | 33 | 32 | 38 | 33 | 48 | 42 | 43 | 47 | 61 | 35 | 39 | 38 | 50 | 53 | 54 | 47 | 51 | 54 | 47 | 56 | 48 | 28 | 45 | 57 | 42 | 58 | 58 | 54 | 60 | 51 | 59 | 52 | 47 | 41 | 29 | 46 | 29 | 42 | 52 | 46 | 40 | 45 | 50 | 46 | 44 | 34 | 50 | 40 | 37 | 29 | 39 | 23 | 33 | 42 | 38 | 56 | 47 | 39 | 48 | 33 | 24 | 39 | 28 | 27 | 41 | 34 | 45 | 41 | 33 | 18 |
| t | t | 8571 | 102.4 | 85 | 9.6e-02 | 0.38 | 0.42 | 3 | 40 | 69 | 98 | 92 | 102 | 100 | 97 | 73 | 97 | 80 | 78 | 88 | 101 | 106 | 89 | 98 | 101 | 107 | 99 | 109 | 95 | 103 | 110 | 105 | 95 | 114 | 107 | 112 | 84 | 109 | 89 | 134 | 108 | 116 | 105 | 94 | 102 | 129 | 127 | 117 | 120 | 124 | 119 | 124 | 116 | 130 | 114 | 129 | 109 | 113 | 108 | 101 | 111 | 130 | 104 | 115 | 109 | 108 | 93 | 112 | 91 | 121 | 104 | 98 | 102 | 101 | 119 | 111 | 110 | 115 | 103 | 92 | 89 | 87 | 97 | 75 | 74 | 84 | 71 | 82 | 67 | 66 | 72 | 73 | 71 | 28 |
| a | a | 8749 | 64.8 | 85 | 9.5e-01 | 3.8 | -0.58 | 4 | 40 | 90 | 82 | 92 | 95 | 86 | 81 | 94 | 67 | 84 | 89 | 112 | 108 | 110 | 107 | 93 | 103 | 102 | 96 | 98 | 100 | 101 | 101 | 116 | 116 | 100 | 113 | 96 | 112 | 90 | 111 | 86 | 118 | 106 | 115 | 111 | 105 | 128 | 126 | 107 | 122 | 106 | 121 | 111 | 113 | 109 | 109 | 112 | 119 | 107 | 127 | 133 | 126 | 100 | 113 | 92 | 102 | 99 | 109 | 95 | 109 | 105 | 99 | 117 | 104 | 108 | 104 | 98 | 113 | 102 | 118 | 108 | 112 | 114 | 93 | 102 | 99 | 79 | 97 | 90 | 100 | 99 | 83 | 72 | 75 | 37 |
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