/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
 Matrices
	file1	20 matrices	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	13	50
		file1	2	10	50
		file1	3	10	84
		file1	4	10	107
		file1	5	10	89
		file1	6	14	37
		file1	7	12	25
		file1	8	14	52
		file1	9	11	95
		file1	10	12	54
		file1	11	15	29
		...	10 more matrices
	file2	20 matrices	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		13		50
		file2		2		10		50
		file2		3		10		84
		file2		4		10		107
		file2		5		10		89
		file2		6		14		37
		file2		7		12		25
		file2		8		14		52
		file2		9		11		95
		file2		10		12		54
		file2		11		15		29
		...	10 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m5 dyads_m5 dyads_m5 dyads_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m1 dyads_m1 dyads_m1 dyads_m1 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
dyads_m3 dyads_m3 dyads_m3 dyads_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv2_m5 oligos_8nt_mkv2_m5 oligos_8nt_mkv2_m5 oligos_8nt_mkv2_m5 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 dyads_m5 oligos_7nt_mkv2_m4 dyads_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv2_m4 oligos_8nt_mkv2_m4 oligos_8nt_mkv2_m4 oligos_8nt_mkv2_m4 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv2_m1 oligos_8nt_mkv2_m1 oligos_8nt_mkv2_m1 oligos_8nt_mkv2_m1 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
dyads_m2 dyads_m2 dyads_m2 dyads_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m5 oligos_7nt_mkv2_m4 dyads_m5 oligos_7nt_mkv2_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m3 oligos_6nt_mkv2_m2 dyads_m3 oligos_6nt_mkv2_m2 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 dyads_m3 oligos_6nt_mkv2_m2 dyads_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m4 dyads_m4 dyads_m4 dyads_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv2_m2 oligos_8nt_mkv2_m2 oligos_8nt_mkv2_m2 oligos_8nt_mkv2_m2 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv2_m3 oligos_8nt_mkv2_m3 oligos_8nt_mkv2_m3 oligos_8nt_mkv2_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_8nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_8nt_mkv2_m2 0.978 0.978 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_8nt_mkv2_m2 oligos_7nt_mkv2_m2 0.978 0.978 12 12 12 12 1.0000 1.0000 1.0000 R 0
dyads_m1 oligos_8nt_mkv2_m1 dyads_m1 oligos_8nt_mkv2_m1 0.994 0.932 16 15 15 16 0.9375 0.9375 1.0000 D 0
oligos_8nt_mkv2_m1 dyads_m1 oligos_8nt_mkv2_m1 dyads_m1 0.994 0.932 15 16 15 16 0.9375 1.0000 0.9375 D 0
dyads_m2 oligos_6nt_mkv2_m4 dyads_m2 oligos_6nt_mkv2_m4 1.000 0.909 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv2_m4 dyads_m2 oligos_6nt_mkv2_m4 dyads_m2 1.000 0.909 10 11 10 11 0.9091 1.0000 0.9091 D -1
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 0.977 0.908 14 13 13 14 0.9286 0.9286 1.0000 D 1
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 0.977 0.908 13 14 13 14 0.9286 1.0000 0.9286 D -1
oligos_7nt_mkv2_m1 oligos_8nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_8nt_mkv2_m1 0.969 0.904 14 15 14 15 0.9333 1.0000 0.9333 D 0
oligos_8nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_8nt_mkv2_m1 oligos_7nt_mkv2_m1 0.969 0.904 15 14 14 15 0.9333 0.9333 1.0000 D 0
dyads_m1 oligos_7nt_mkv2_m1 dyads_m1 oligos_7nt_mkv2_m1 0.967 0.847 16 14 14 16 0.8750 0.8750 1.0000 D 0
oligos_7nt_mkv2_m1 dyads_m1 oligos_7nt_mkv2_m1 dyads_m1 0.967 0.847 14 16 14 16 0.8750 1.0000 0.8750 D 0
oligos_6nt_mkv2_m1 oligos_8nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_8nt_mkv2_m1 0.961 0.833 13 15 13 15 0.8667 1.0000 0.8667 D -1
oligos_8nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_8nt_mkv2_m1 oligos_6nt_mkv2_m1 0.961 0.833 15 13 13 15 0.8667 0.8667 1.0000 D 1
oligos_7nt_mkv2_m4 oligos_8nt_mkv2_m5 oligos_7nt_mkv2_m4 oligos_8nt_mkv2_m5 0.967 0.819 11 13 11 13 0.8462 1.0000 0.8462 R -2
oligos_8nt_mkv2_m5 dyads_m5 oligos_8nt_mkv2_m5 dyads_m5 0.967 0.819 13 11 11 13 0.8462 0.8462 1.0000 R 0
oligos_8nt_mkv2_m5 oligos_7nt_mkv2_m4 oligos_8nt_mkv2_m5 oligos_7nt_mkv2_m4 0.967 0.819 13 11 11 13 0.8462 0.8462 1.0000 R 0
dyads_m5 oligos_8nt_mkv2_m5 dyads_m5 oligos_8nt_mkv2_m5 0.967 0.819 11 13 11 13 0.8462 1.0000 0.8462 R -2
dyads_m1 oligos_6nt_mkv2_m1 dyads_m1 oligos_6nt_mkv2_m1 0.958 0.778 16 13 13 16 0.8125 0.8125 1.0000 D 1
oligos_6nt_mkv2_m1 dyads_m1 oligos_6nt_mkv2_m1 dyads_m1 0.958 0.778 13 16 13 16 0.8125 1.0000 0.8125 D -1
oligos_7nt_mkv2_m3 oligos_8nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_8nt_mkv2_m4 0.890 0.771 14 14 13 15 0.8667 0.9286 0.9286 R -1
oligos_8nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_8nt_mkv2_m4 oligos_7nt_mkv2_m3 0.890 0.771 14 14 13 15 0.8667 0.9286 0.9286 R -1
dyads_m3 oligos_7nt_mkv2_m3 dyads_m3 oligos_7nt_mkv2_m3 0.923 0.659 10 14 10 14 0.7143 1.0000 0.7143 D -2
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m3 0.923 0.659 10 14 10 14 0.7143 1.0000 0.7143 D -2
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m2 0.923 0.659 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_7nt_mkv2_m3 dyads_m3 oligos_7nt_mkv2_m3 dyads_m3 0.923 0.659 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_8nt_mkv2_m4 dyads_m3 oligos_8nt_mkv2_m4 dyads_m3 0.916 0.654 14 10 10 14 0.7143 0.7143 1.0000 R 1
oligos_8nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_8nt_mkv2_m4 oligos_6nt_mkv2_m2 0.916 0.654 14 10 10 14 0.7143 0.7143 1.0000 R 1
dyads_m3 oligos_8nt_mkv2_m4 dyads_m3 oligos_8nt_mkv2_m4 0.916 0.654 10 14 10 14 0.7143 1.0000 0.7143 R -3
oligos_6nt_mkv2_m2 oligos_8nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_8nt_mkv2_m4 0.916 0.654 10 14 10 14 0.7143 1.0000 0.7143 R -3
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m5 0.706 0.588 10 12 10 12 0.8333 1.0000 0.8333 R -1
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m5 0.706 0.588 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_mkv2_m4 dyads_m4 oligos_7nt_mkv2_m4 dyads_m4 0.735 0.472 11 12 9 14 0.6429 0.8182 0.7500 D -3
dyads_m4 oligos_7nt_mkv2_m4 dyads_m4 oligos_7nt_mkv2_m4 0.735 0.472 12 11 9 14 0.6429 0.7500 0.8182 D 3
dyads_m4 dyads_m5 dyads_m4 dyads_m5 0.735 0.472 12 11 9 14 0.6429 0.7500 0.8182 D 3
dyads_m5 dyads_m4 dyads_m5 dyads_m4 0.735 0.472 11 12 9 14 0.6429 0.8182 0.7500 D -3
dyads_m4 oligos_8nt_mkv2_m5 dyads_m4 oligos_8nt_mkv2_m5 0.743 0.418 12 13 9 16 0.5625 0.7500 0.6923 R 3
oligos_8nt_mkv2_m5 dyads_m4 oligos_8nt_mkv2_m5 dyads_m4 0.743 0.418 13 12 9 16 0.5625 0.6923 0.7500 R 4 
 Host name	rsat
 Job started	2026-02-26.135857
 Job done	2026-02-26.135910
 Seconds	0.5
	user	0.5
	system	0.41
	cuser	10.53
;	csystem	1.85