/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_vs_db/peak-motifs_motifs_vs_db_ArabidopsisPBM.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/ArabidopsisPBM/ArabidopsisPBM_2015-11-06.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_vs_db/peak-motifs_motifs_vs_db_ArabidopsisPBM.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/ArabidopsisPBM/ArabidopsisPBM_2015-11-06.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_vs_db/peak-motifs_motifs_vs_db_ArabidopsisPBM_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_vs_db/peak-motifs_motifs_vs_db_ArabidopsisPBM.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_vs_db/peak-motifs_motifs_vs_db_ArabidopsisPBM_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_vs_db/peak-motifs_motifs_vs_db_ArabidopsisPBM
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_vs_db/peak-motifs_motifs_vs_db_ArabidopsisPBM_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_vs_db/peak-motifs_motifs_vs_db_ArabidopsisPBM.tab
 Matrices
	file1	20 matrices	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	13	50
		file1	2	10	50
		file1	3	10	84
		file1	4	10	107
		file1	5	10	89
		file1	6	14	37
		file1	7	12	25
		file1	8	14	52
		file1	9	11	95
		file1	10	12	54
		file1	11	15	29
		...	10 more matrices
	file2	108 matrices	$RSAT/public_html/motif_databases/ArabidopsisPBM/ArabidopsisPBM_2015-11-06.tf
		file2		1		10		100
		file2		2		10		100
		file2		3		10		100
		file2		4		10		100
		file2		5		10		100
		file2		6		10		100
		file2		7		10		100
		file2		8		10		100
		file2		9		10		100
		file2		10		10		100
		file2		11		10		100
		...	98 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m3 7278_WOX13_2_ArabidopsisPBM_20140210_ oligos_6nt_mkv2_m3 7278_WOX13_2_ArabidopsisPBM_20140210_ 0.907 0.907 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 7184_AHL12_2_ArabidopsisPBM_20140210_ oligos_6nt_mkv2_m3 7184_AHL12_2_ArabidopsisPBM_20140210_ 0.826 0.826 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 7231_ICU4_ArabidopsisPBM_20140210_ oligos_6nt_mkv2_m3 7231_ICU4_ArabidopsisPBM_20140210_ 0.786 0.643 10 10 9 11 0.8182 0.9000 0.9000 R -1
oligos_6nt_mkv2_m3 7284_YAB5_ArabidopsisPBM_20140210_ oligos_6nt_mkv2_m3 7284_YAB5_ArabidopsisPBM_20140210_ 0.776 0.635 10 10 9 11 0.8182 0.9000 0.9000 D -1
oligos_6nt_mkv2_m1 7237_MYB111_2_ArabidopsisPBM_20140210_ oligos_6nt_mkv2_m1 7237_MYB111_2_ArabidopsisPBM_20140210_ 0.798 0.614 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_6nt_mkv2_m1 7242_MYB55_ArabidopsisPBM_20140210_ oligos_6nt_mkv2_m1 7242_MYB55_ArabidopsisPBM_20140210_ 0.782 0.602 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_6nt_mkv2_m1 7236_MYB111_ArabidopsisPBM_20140210_ oligos_6nt_mkv2_m1 7236_MYB111_ArabidopsisPBM_20140210_ 0.752 0.578 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_6nt_mkv2_m1 7238_MYB46_ArabidopsisPBM_20140210_ oligos_6nt_mkv2_m1 7238_MYB46_ArabidopsisPBM_20140210_ 0.740 0.569 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv2_m1 7242_MYB55_ArabidopsisPBM_20140210_ oligos_7nt_mkv2_m1 7242_MYB55_ArabidopsisPBM_20140210_ 0.770 0.550 14 10 10 14 0.7143 0.7143 1.0000 D 3
oligos_6nt_mkv2_m3 7189_AHL25_ArabidopsisPBM_20140210_ oligos_6nt_mkv2_m3 7189_AHL25_ArabidopsisPBM_20140210_ 0.825 0.550 10 10 8 12 0.6667 0.8000 0.8000 D -2
oligos_6nt_mkv2_m3 7187_AHL20_2_ArabidopsisPBM_20140210_ oligos_6nt_mkv2_m3 7187_AHL20_2_ArabidopsisPBM_20140210_ 0.821 0.547 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_7nt_mkv2_m1 7237_MYB111_2_ArabidopsisPBM_20140210_ oligos_7nt_mkv2_m1 7237_MYB111_2_ArabidopsisPBM_20140210_ 0.766 0.547 14 10 10 14 0.7143 0.7143 1.0000 R 2
oligos_8nt_mkv2_m1 7237_MYB111_2_ArabidopsisPBM_20140210_ oligos_8nt_mkv2_m1 7237_MYB111_2_ArabidopsisPBM_20140210_ 0.811 0.541 15 10 10 15 0.6667 0.6667 1.0000 R 2
oligos_8nt_mkv2_m1 7242_MYB55_ArabidopsisPBM_20140210_ oligos_8nt_mkv2_m1 7242_MYB55_ArabidopsisPBM_20140210_ 0.781 0.521 15 10 10 15 0.6667 0.6667 1.0000 D 3
oligos_6nt_mkv2_m3 7183_AHL12_ArabidopsisPBM_20140210_ oligos_6nt_mkv2_m3 7183_AHL12_ArabidopsisPBM_20140210_ 0.772 0.515 10 10 8 12 0.6667 0.8000 0.8000 R -2
dyads_m1 7237_MYB111_2_ArabidopsisPBM_20140210_ dyads_m1 7237_MYB111_2_ArabidopsisPBM_20140210_ 0.811 0.507 16 10 10 16 0.6250 0.6250 1.0000 R 2
oligos_6nt_mkv2_m3 7205_ATHB51_ArabidopsisPBM_20140210_ oligos_6nt_mkv2_m3 7205_ATHB51_ArabidopsisPBM_20140210_ 0.757 0.505 10 10 8 12 0.6667 0.8000 0.8000 R -2
oligos_7nt_mkv2_m1 7236_MYB111_ArabidopsisPBM_20140210_ oligos_7nt_mkv2_m1 7236_MYB111_ArabidopsisPBM_20140210_ 0.705 0.504 14 10 10 14 0.7143 0.7143 1.0000 R 2
oligos_8nt_mkv2_m1 7243_MYB55_2_ArabidopsisPBM_20140210_ oligos_8nt_mkv2_m1 7243_MYB55_2_ArabidopsisPBM_20140210_ 0.745 0.497 15 10 10 15 0.6667 0.6667 1.0000 R 5
dyads_m1 7243_MYB55_2_ArabidopsisPBM_20140210_ dyads_m1 7243_MYB55_2_ArabidopsisPBM_20140210_ 0.780 0.487 16 10 10 16 0.6250 0.6250 1.0000 R 5
dyads_m1 7242_MYB55_ArabidopsisPBM_20140210_ dyads_m1 7242_MYB55_ArabidopsisPBM_20140210_ 0.780 0.487 16 10 10 16 0.6250 0.6250 1.0000 D 3
oligos_6nt_mkv2_m3 7191_AHL25_3_ArabidopsisPBM_20140210_ oligos_6nt_mkv2_m3 7191_AHL25_3_ArabidopsisPBM_20140210_ 0.729 0.486 10 10 8 12 0.6667 0.8000 0.8000 D -2
oligos_8nt_mkv2_m1 7236_MYB111_ArabidopsisPBM_20140210_ oligos_8nt_mkv2_m1 7236_MYB111_ArabidopsisPBM_20140210_ 0.726 0.484 15 10 10 15 0.6667 0.6667 1.0000 R 2
oligos_8nt_mkv2_m1 7238_MYB46_ArabidopsisPBM_20140210_ oligos_8nt_mkv2_m1 7238_MYB46_ArabidopsisPBM_20140210_ 0.725 0.483 15 10 10 15 0.6667 0.6667 1.0000 R 2
oligos_8nt_mkv2_m1 7239_MYB46_2_ArabidopsisPBM_20140210_ oligos_8nt_mkv2_m1 7239_MYB46_2_ArabidopsisPBM_20140210_ 0.711 0.474 15 10 10 15 0.6667 0.6667 1.0000 D 5
dyads_m1 7239_MYB46_2_ArabidopsisPBM_20140210_ dyads_m1 7239_MYB46_2_ArabidopsisPBM_20140210_ 0.749 0.468 16 10 10 16 0.6250 0.6250 1.0000 D 5
oligos_8nt_mkv2_m2 7240_MYB52_ArabidopsisPBM_20140210_ oligos_8nt_mkv2_m2 7240_MYB52_ArabidopsisPBM_20140210_ 0.806 0.461 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_6nt_mkv2_m1 7243_MYB55_2_ArabidopsisPBM_20140210_ oligos_6nt_mkv2_m1 7243_MYB55_2_ArabidopsisPBM_20140210_ 0.715 0.460 13 10 9 14 0.6429 0.6923 0.9000 R 4
dyads_m1 7236_MYB111_ArabidopsisPBM_20140210_ dyads_m1 7236_MYB111_ArabidopsisPBM_20140210_ 0.734 0.459 16 10 10 16 0.6250 0.6250 1.0000 R 2
dyads_m1 7238_MYB46_ArabidopsisPBM_20140210_ dyads_m1 7238_MYB46_ArabidopsisPBM_20140210_ 0.727 0.455 16 10 10 16 0.6250 0.6250 1.0000 R 2
oligos_7nt_mkv2_m2 7240_MYB52_ArabidopsisPBM_20140210_ oligos_7nt_mkv2_m2 7240_MYB52_ArabidopsisPBM_20140210_ 0.733 0.419 12 10 8 14 0.5714 0.6667 0.8000 R 4
oligos_7nt_mkv2_m2 7218_DOF5.7_2_ArabidopsisPBM_20140210_ oligos_7nt_mkv2_m2 7218_DOF5.7_2_ArabidopsisPBM_20140210_ 0.711 0.406 12 10 8 14 0.5714 0.6667 0.8000 D 4 
 Host name	rsat
 Job started	2026-02-26.135925
 Job done	2026-02-26.135931
 Seconds	0.34
	user	0.34
	system	0.24
	cuser	5.19
;	csystem	0.9