One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/ArabidopsisPBM/ArabidopsisPBM_2015-11-06.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.135827_2026-02-26.135827_NiTe41/results/discovered_vs_db/peak-motifs_motifs_vs_db_ArabidopsisPBM.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m3_shift2 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m3_shift2 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=10; shift=2; ncol=12; --wwTAATTAww ; Alignment reference a 0 0 36 29 0 84 84 0 0 84 29 26 c 0 0 11 14 0 0 0 0 0 0 12 11 g 0 0 11 12 0 0 0 0 0 0 14 11 t 0 0 26 29 84 0 0 84 84 0 29 36

7278_WOX13_2_ArabidopsisPBM_20140210__shift2 (7278_WOX13_2_ArabidopsisPBM_20140210_)
; oligos_6nt_mkv2_m3 versus 7278_WOX13_2_ArabidopsisPBM_20140210_; m=1/9; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.907285; --tttAATTaam ; cor=; Ncor= a 0 0 22 16 20 81 81 8 10 59 57 27 c 0 0 22 15 17 6 2 9 3 4 11 34 g 0 0 19 11 4 3 9 2 6 17 16 20 t 0 0 37 58 59 10 8 81 81 20 16 19

7184_AHL12_2_ArabidopsisPBM_20140210__shift2 (7184_AHL12_2_ArabidopsisPBM_20140210_)
; oligos_6nt_mkv2_m3 versus 7184_AHL12_2_ArabidopsisPBM_20140210_; m=2/9; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.826396; --rwwAWWTwwT ; cor=; Ncor= a 0 0 34 56 37 79 74 25 20 59 40 5 c 0 0 9 2 2 0 0 1 1 2 2 18 g 0 0 42 2 2 1 1 0 0 2 3 3 t 0 0 15 40 59 20 25 74 79 37 55 74

7231_ICU4_ArabidopsisPBM_20140210__rc_shift1 (7231_ICU4_ArabidopsisPBM_20140210__rc)
; oligos_6nt_mkv2_m3 versus 7231_ICU4_ArabidopsisPBM_20140210__rc; m=3/9; ncol2=10; w=-1; offset=-1; strand=R; shift=1; score=0.642993; -TAAThATTAc- ; cor=; Ncor= a 0 9 72 93 4 38 93 3 3 68 9 0 c 0 17 19 3 1 28 2 1 6 6 64 0 g 0 6 6 1 2 7 1 3 19 17 7 0 t 0 68 3 3 93 27 4 93 72 9 20 0

7284_YAB5_ArabidopsisPBM_20140210__shift1 (7284_YAB5_ArabidopsisPBM_20140210_)
; oligos_6nt_mkv2_m3 versus 7284_YAB5_ArabidopsisPBM_20140210_; m=4/9; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.634603; -waATgAtTAh- ; cor=; Ncor= a 0 28 53 78 7 18 78 10 15 73 29 0 c 0 23 8 9 16 24 5 18 4 17 26 0 g 0 22 18 5 3 53 2 5 10 6 16 0 t 0 27 21 8 74 5 15 67 71 4 29 0

7189_AHL25_ArabidopsisPBM_20140210__shift0 (7189_AHL25_ArabidopsisPBM_20140210_)
; oligos_6nt_mkv2_m3 versus 7189_AHL25_ArabidopsisPBM_20140210_; m=5/9; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.549813; dAwTTAAwTw-- ; cor=; Ncor= a 30 87 62 21 23 77 79 38 5 39 0 0 c 17 3 0 0 0 0 0 0 5 16 0 0 g 28 5 1 0 0 0 0 0 3 9 0 0 t 25 5 37 79 77 23 21 62 87 36 0 0

7187_AHL20_2_ArabidopsisPBM_20140210__shift4 (7187_AHL20_2_ArabidopsisPBM_20140210_)
; oligos_6nt_mkv2_m3 versus 7187_AHL20_2_ArabidopsisPBM_20140210_; m=6/9; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.547395; ----hAATTAAw ; cor=; Ncor= a 0 0 0 0 28 77 75 13 24 77 84 65 c 0 0 0 0 27 7 1 0 1 0 1 1 g 0 0 0 0 9 7 1 1 1 0 0 0 t 0 0 0 0 36 9 23 86 74 23 15 34

7183_AHL12_ArabidopsisPBM_20140210__rc_shift0 (7183_AHL12_ArabidopsisPBM_20140210__rc)
; oligos_6nt_mkv2_m3 versus 7183_AHL12_ArabidopsisPBM_20140210__rc; m=7/9; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score=0.514619; wAAwwwwTTw-- ; cor=; Ncor= a 37 77 84 49 33 66 50 10 6 42 0 0 c 13 2 4 1 1 0 0 2 15 13 0 0 g 11 15 2 0 0 1 2 4 2 8 0 0 t 39 6 10 50 66 33 48 84 77 37 0 0

7205_ATHB51_ArabidopsisPBM_20140210__rc_shift0 (7205_ATHB51_ArabidopsisPBM_20140210__rc)
; oligos_6nt_mkv2_m3 versus 7205_ATHB51_ArabidopsisPBM_20140210__rc; m=8/9; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score=0.504544; kCAATwATKr-- ; cor=; Ncor= a 21 10 96 99 0 58 99 2 6 32 0 0 c 21 78 1 0 1 0 0 0 0 16 0 0 g 26 2 3 0 0 1 1 0 25 38 0 0 t 32 10 0 1 99 41 0 98 69 14 0 0

7191_AHL25_3_ArabidopsisPBM_20140210__shift0 (7191_AHL25_3_ArabidopsisPBM_20140210_)
; oligos_6nt_mkv2_m3 versus 7191_AHL25_3_ArabidopsisPBM_20140210_; m=9/9; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.486321; waWwWwAwTw-- ; cor=; Ncor= a 37 54 74 39 29 49 83 37 8 28 0 0 c 18 9 0 1 0 0 0 1 3 9 0 0 g 16 15 1 0 0 0 1 0 6 7 0 0 t 29 22 25 60 71 51 16 62 83 56 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m1_shift0 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=13; shift=0; ncol=13; ytcACCAACCCmm ; Alignment reference a 9 11 11 46 0 0 44 45 11 1 11 19 18 c 14 6 27 1 50 47 1 2 38 42 34 18 17 g 4 7 5 0 0 1 1 2 1 0 4 5 7 t 23 26 7 3 0 2 4 1 0 7 1 8 8

7237_MYB111_2_ArabidopsisPBM_20140210__rc_shift1 (7237_MYB111_2_ArabidopsisPBM_20140210__rc)
; oligos_6nt_mkv2_m1 versus 7237_MYB111_2_ArabidopsisPBM_20140210__rc; m=1/5; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.613959; -cYAMCwACCt-- ; cor=; Ncor= a 0 13 0 97 26 0 37 99 14 1 22 0 0 c 0 58 68 0 73 98 3 1 85 93 11 0 0 g 0 13 2 1 1 0 1 0 0 0 10 0 0 t 0 16 30 2 0 2 59 0 1 6 57 0 0

7242_MYB55_ArabidopsisPBM_20140210__shift2 (7242_MYB55_ArabidopsisPBM_20140210_)
; oligos_6nt_mkv2_m1 versus 7242_MYB55_ArabidopsisPBM_20140210_; m=2/5; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.601847; --yACCTAMCGv- ; cor=; Ncor= a 0 0 11 98 5 0 23 98 27 0 12 25 0 c 0 0 36 0 95 99 5 0 73 96 5 28 0 g 0 0 5 2 0 0 2 2 0 0 76 30 0 t 0 0 48 0 0 1 70 0 0 4 7 17 0

7236_MYB111_ArabidopsisPBM_20140210__rc_shift1 (7236_MYB111_ArabidopsisPBM_20140210__rc)
; oligos_6nt_mkv2_m1 versus 7236_MYB111_ArabidopsisPBM_20140210__rc; m=3/5; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.578132; -syACCTAmCh-- ; cor=; Ncor= a 0 15 5 99 13 0 11 98 36 1 34 0 0 c 0 46 39 0 85 98 1 0 64 76 28 0 0 g 0 32 3 0 1 0 1 2 0 0 10 0 0 t 0 7 53 1 1 2 87 0 0 23 28 0 0

7238_MYB46_ArabidopsisPBM_20140210__rc_shift1 (7238_MYB46_ArabidopsisPBM_20140210__rc)
; oligos_6nt_mkv2_m1 versus 7238_MYB46_ArabidopsisPBM_20140210__rc; m=4/5; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.569328; -yyACCTAmCt-- ; cor=; Ncor= a 0 15 4 96 9 0 12 98 61 1 20 0 0 c 0 37 36 0 91 100 1 0 39 91 22 0 0 g 0 22 2 4 0 0 3 1 0 0 16 0 0 t 0 26 58 0 0 0 84 1 0 8 42 0 0

7243_MYB55_2_ArabidopsisPBM_20140210__rc_shift4 (7243_MYB55_2_ArabidopsisPBM_20140210__rc)
; oligos_6nt_mkv2_m1 versus 7243_MYB55_2_ArabidopsisPBM_20140210__rc; m=5/5; ncol2=10; w=0; offset=4; strand=R; shift=4; score=0.459937; ----cCAmCCAMC ; cor=; Ncor= a 0 0 0 0 13 2 96 54 1 17 91 28 2 c 0 0 0 0 62 83 2 44 98 69 0 70 89 g 0 0 0 0 11 5 0 1 0 3 8 1 1 t 0 0 0 0 14 10 2 1 1 11 1 1 8

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=14; shift=0; ncol=14; mtTcACCAACCCmm ; Alignment reference a 15 7 3 4 34 1 0 33 35 4 1 4 11 11 c 10 6 2 22 1 34 35 0 1 31 29 29 14 13 g 3 2 3 4 0 0 0 1 0 2 1 4 4 5 t 9 22 29 7 2 2 2 3 1 0 6 0 8 8

7242_MYB55_ArabidopsisPBM_20140210__shift3 (7242_MYB55_ArabidopsisPBM_20140210_)
; oligos_7nt_mkv2_m1 versus 7242_MYB55_ArabidopsisPBM_20140210_; m=1/3; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.550159; ---yACCTAMCGv- ; cor=; Ncor= a 0 0 0 11 98 5 0 23 98 27 0 12 25 0 c 0 0 0 36 0 95 99 5 0 73 96 5 28 0 g 0 0 0 5 2 0 0 2 2 0 0 76 30 0 t 0 0 0 48 0 0 1 70 0 0 4 7 17 0

7237_MYB111_2_ArabidopsisPBM_20140210__rc_shift2 (7237_MYB111_2_ArabidopsisPBM_20140210__rc)
; oligos_7nt_mkv2_m1 versus 7237_MYB111_2_ArabidopsisPBM_20140210__rc; m=2/3; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.547096; --cYAMCwACCt-- ; cor=; Ncor= a 0 0 13 0 97 26 0 37 99 14 1 22 0 0 c 0 0 58 68 0 73 98 3 1 85 93 11 0 0 g 0 0 13 2 1 1 0 1 0 0 0 10 0 0 t 0 0 16 30 2 0 2 59 0 1 6 57 0 0

7236_MYB111_ArabidopsisPBM_20140210__rc_shift2 (7236_MYB111_ArabidopsisPBM_20140210__rc)
; oligos_7nt_mkv2_m1 versus 7236_MYB111_ArabidopsisPBM_20140210__rc; m=3/3; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.503565; --syACCTAmCh-- ; cor=; Ncor= a 0 0 15 5 99 13 0 11 98 36 1 34 0 0 c 0 0 46 39 0 85 98 1 0 64 76 28 0 0 g 0 0 32 3 0 1 0 1 2 0 0 10 0 0 t 0 0 7 53 1 1 2 87 0 0 23 28 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m1_shift0 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m1_shift0 (oligos_8nt_mkv2_m1)
; oligos_8nt_mkv2_m1; m=0 (reference); ncol1=15; shift=0; ncol=15; mtTCACCAACCmCmm ; Alignment reference a 12 5 3 0 27 1 0 26 26 4 0 8 4 11 9 c 9 6 3 22 0 28 29 0 1 24 27 17 20 10 9 g 2 2 0 3 0 0 0 0 2 1 0 3 2 6 4 t 6 16 23 4 2 0 0 3 0 0 2 1 3 2 7

7237_MYB111_2_ArabidopsisPBM_20140210__rc_shift2 (7237_MYB111_2_ArabidopsisPBM_20140210__rc)
; oligos_8nt_mkv2_m1 versus 7237_MYB111_2_ArabidopsisPBM_20140210__rc; m=1/6; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.540576; --cYAMCwACCt--- ; cor=; Ncor= a 0 0 13 0 97 26 0 37 99 14 1 22 0 0 0 c 0 0 58 68 0 73 98 3 1 85 93 11 0 0 0 g 0 0 13 2 1 1 0 1 0 0 0 10 0 0 0 t 0 0 16 30 2 0 2 59 0 1 6 57 0 0 0

7242_MYB55_ArabidopsisPBM_20140210__shift3 (7242_MYB55_ArabidopsisPBM_20140210_)
; oligos_8nt_mkv2_m1 versus 7242_MYB55_ArabidopsisPBM_20140210_; m=2/6; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.520683; ---yACCTAMCGv-- ; cor=; Ncor= a 0 0 0 11 98 5 0 23 98 27 0 12 25 0 0 c 0 0 0 36 0 95 99 5 0 73 96 5 28 0 0 g 0 0 0 5 2 0 0 2 2 0 0 76 30 0 0 t 0 0 0 48 0 0 1 70 0 0 4 7 17 0 0

7243_MYB55_2_ArabidopsisPBM_20140210__rc_shift5 (7243_MYB55_2_ArabidopsisPBM_20140210__rc)
; oligos_8nt_mkv2_m1 versus 7243_MYB55_2_ArabidopsisPBM_20140210__rc; m=3/6; ncol2=10; w=0; offset=5; strand=R; shift=5; score=0.496655; -----cCAmCCAMCg ; cor=; Ncor= a 0 0 0 0 0 13 2 96 54 1 17 91 28 2 24 c 0 0 0 0 0 62 83 2 44 98 69 0 70 89 14 g 0 0 0 0 0 11 5 0 1 0 3 8 1 1 54 t 0 0 0 0 0 14 10 2 1 1 11 1 1 8 8

7236_MYB111_ArabidopsisPBM_20140210__rc_shift2 (7236_MYB111_ArabidopsisPBM_20140210__rc)
; oligos_8nt_mkv2_m1 versus 7236_MYB111_ArabidopsisPBM_20140210__rc; m=4/6; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.484147; --syACCTAmCh--- ; cor=; Ncor= a 0 0 15 5 99 13 0 11 98 36 1 34 0 0 0 c 0 0 46 39 0 85 98 1 0 64 76 28 0 0 0 g 0 0 32 3 0 1 0 1 2 0 0 10 0 0 0 t 0 0 7 53 1 1 2 87 0 0 23 28 0 0 0

7238_MYB46_ArabidopsisPBM_20140210__rc_shift2 (7238_MYB46_ArabidopsisPBM_20140210__rc)
; oligos_8nt_mkv2_m1 versus 7238_MYB46_ArabidopsisPBM_20140210__rc; m=5/6; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.483323; --yyACCTAmCt--- ; cor=; Ncor= a 0 0 15 4 96 9 0 12 98 61 1 20 0 0 0 c 0 0 37 36 0 91 100 1 0 39 91 22 0 0 0 g 0 0 22 2 4 0 0 3 1 0 0 16 0 0 0 t 0 0 26 58 0 0 0 84 1 0 8 42 0 0 0

7239_MYB46_2_ArabidopsisPBM_20140210__shift5 (7239_MYB46_2_ArabidopsisPBM_20140210_)
; oligos_8nt_mkv2_m1 versus 7239_MYB46_2_ArabidopsisPBM_20140210_; m=6/6; ncol2=10; w=0; offset=5; strand=D; shift=5; score= 0.4743; -----yyAACCAmCr ; cor=; Ncor= a 0 0 0 0 0 16 5 92 82 1 21 82 25 6 31 c 0 0 0 0 0 29 53 3 13 96 68 1 64 72 19 g 0 0 0 0 0 24 13 3 2 1 7 16 2 3 39 t 0 0 0 0 0 31 29 2 3 2 4 1 9 19 11

One-to-n matrix alignment; reference matrix: dyads_m1_shift0 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m1_shift0 (dyads_m1)
; dyads_m1; m=0 (reference); ncol1=16; shift=0; ncol=16; htTCACCAACCmCmhm ; Alignment reference a 14 8 4 1 33 2 0 32 33 5 1 12 5 11 13 11 c 11 6 4 25 1 34 35 0 1 30 30 20 25 17 10 16 g 2 3 0 3 0 0 0 0 2 1 2 3 2 6 4 2 t 9 19 28 7 2 0 1 4 0 0 3 1 4 2 9 7

7237_MYB111_2_ArabidopsisPBM_20140210__rc_shift2 (7237_MYB111_2_ArabidopsisPBM_20140210__rc)
; dyads_m1 versus 7237_MYB111_2_ArabidopsisPBM_20140210__rc; m=1/6; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.506963; --cYAMCwACCt---- ; cor=; Ncor= a 0 0 13 0 97 26 0 37 99 14 1 22 0 0 0 0 c 0 0 58 68 0 73 98 3 1 85 93 11 0 0 0 0 g 0 0 13 2 1 1 0 1 0 0 0 10 0 0 0 0 t 0 0 16 30 2 0 2 59 0 1 6 57 0 0 0 0

7243_MYB55_2_ArabidopsisPBM_20140210__rc_shift5 (7243_MYB55_2_ArabidopsisPBM_20140210__rc)
; dyads_m1 versus 7243_MYB55_2_ArabidopsisPBM_20140210__rc; m=2/6; ncol2=10; w=0; offset=5; strand=R; shift=5; score=0.487275; -----cCAmCCAMCg- ; cor=; Ncor= a 0 0 0 0 0 13 2 96 54 1 17 91 28 2 24 0 c 0 0 0 0 0 62 83 2 44 98 69 0 70 89 14 0 g 0 0 0 0 0 11 5 0 1 0 3 8 1 1 54 0 t 0 0 0 0 0 14 10 2 1 1 11 1 1 8 8 0

7242_MYB55_ArabidopsisPBM_20140210__shift3 (7242_MYB55_ArabidopsisPBM_20140210_)
; dyads_m1 versus 7242_MYB55_ArabidopsisPBM_20140210_; m=3/6; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.487266; ---yACCTAMCGv--- ; cor=; Ncor= a 0 0 0 11 98 5 0 23 98 27 0 12 25 0 0 0 c 0 0 0 36 0 95 99 5 0 73 96 5 28 0 0 0 g 0 0 0 5 2 0 0 2 2 0 0 76 30 0 0 0 t 0 0 0 48 0 0 1 70 0 0 4 7 17 0 0 0

7239_MYB46_2_ArabidopsisPBM_20140210__shift5 (7239_MYB46_2_ArabidopsisPBM_20140210_)
; dyads_m1 versus 7239_MYB46_2_ArabidopsisPBM_20140210_; m=4/6; ncol2=10; w=0; offset=5; strand=D; shift=5; score=0.468282; -----yyAACCAmCr- ; cor=; Ncor= a 0 0 0 0 0 16 5 92 82 1 21 82 25 6 31 0 c 0 0 0 0 0 29 53 3 13 96 68 1 64 72 19 0 g 0 0 0 0 0 24 13 3 2 1 7 16 2 3 39 0 t 0 0 0 0 0 31 29 2 3 2 4 1 9 19 11 0

7236_MYB111_ArabidopsisPBM_20140210__rc_shift2 (7236_MYB111_ArabidopsisPBM_20140210__rc)
; dyads_m1 versus 7236_MYB111_ArabidopsisPBM_20140210__rc; m=5/6; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.458992; --syACCTAmCh---- ; cor=; Ncor= a 0 0 15 5 99 13 0 11 98 36 1 34 0 0 0 0 c 0 0 46 39 0 85 98 1 0 64 76 28 0 0 0 0 g 0 0 32 3 0 1 0 1 2 0 0 10 0 0 0 0 t 0 0 7 53 1 1 2 87 0 0 23 28 0 0 0 0

7238_MYB46_ArabidopsisPBM_20140210__rc_shift2 (7238_MYB46_ArabidopsisPBM_20140210__rc)
; dyads_m1 versus 7238_MYB46_ArabidopsisPBM_20140210__rc; m=6/6; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.454609; --yyACCTAmCt---- ; cor=; Ncor= a 0 0 15 4 96 9 0 12 98 61 1 20 0 0 0 0 c 0 0 37 36 0 91 100 1 0 39 91 22 0 0 0 0 g 0 0 22 2 4 0 0 3 1 0 0 16 0 0 0 0 t 0 0 26 58 0 0 0 84 1 0 8 42 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m2_shift2 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m2_shift2 (oligos_8nt_mkv2_m2)
; oligos_8nt_mkv2_m2; m=0 (reference); ncol1=12; shift=2; ncol=14; --ywAACGGCGTtw ; Alignment reference a 0 0 4 9 15 16 1 0 2 0 0 1 3 5 c 0 0 6 1 1 0 16 1 2 17 0 0 4 1 g 0 0 2 0 2 1 0 16 14 0 18 1 4 3 t 0 0 6 8 0 1 1 1 0 1 0 16 7 9

7240_MYB52_ArabidopsisPBM_20140210__shift0 (7240_MYB52_ArabidopsisPBM_20140210_)
; oligos_8nt_mkv2_m2 versus 7240_MYB52_ArabidopsisPBM_20140210_; m=1/1; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.460582; amcTAACGGw---- ; cor=; Ncor= a 64 49 24 10 92 87 2 9 13 46 0 0 0 0 c 8 30 52 11 1 10 92 5 2 18 0 0 0 0 g 17 15 10 4 4 1 3 79 79 9 0 0 0 0 t 11 6 14 75 3 2 3 7 6 27 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; waACGsCGTtwa ; Alignment reference a 11 12 23 0 1 2 1 1 1 2 11 10 c 3 5 1 25 0 14 23 0 1 5 0 4 g 1 5 0 0 24 7 1 23 0 3 1 6 t 10 3 1 0 0 2 0 1 23 15 13 5

7240_MYB52_ArabidopsisPBM_20140210__rc_shift4 (7240_MYB52_ArabidopsisPBM_20140210__rc)
; oligos_7nt_mkv2_m2 versus 7240_MYB52_ArabidopsisPBM_20140210__rc; m=1/2; ncol2=10; w=0; offset=4; strand=R; shift=4; score=0.418947; ----wCCGTTAg ; cor=; Ncor= a 0 0 0 0 27 6 7 3 2 3 75 14 c 0 0 0 0 9 79 79 3 1 4 4 10 g 0 0 0 0 18 2 5 92 10 1 11 52 t 0 0 0 0 46 13 9 2 87 92 10 24

7218_DOF5.7_2_ArabidopsisPBM_20140210__shift4 (7218_DOF5.7_2_ArabidopsisPBM_20140210_)
; oligos_7nt_mkv2_m2 versus 7218_DOF5.7_2_ArabidopsisPBM_20140210_; m=2/2; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.406268; ----awCGTTAA ; cor=; Ncor= a 0 0 0 0 44 47 2 2 2 1 88 87 c 0 0 0 0 8 15 94 0 0 1 3 5 g 0 0 0 0 24 13 2 94 2 2 3 3 t 0 0 0 0 24 25 2 4 96 96 6 5

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m3_shift2 (oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=10; shift=2; ncol=12; --wwTAATTAww ; Alignment reference a 0 0 36 29 0 84 84 0 0 84 29 26 c 0 0 11 14 0 0 0 0 0 0 12 11 g 0 0 11 12 0 0 0 0 0 0 14 11 t 0 0 26 29 84 0 0 84 84 0 29 36
7278_WOX13_2_ArabidopsisPBM_20140210__shift2 (7278_WOX13_2_ArabidopsisPBM_20140210_)				; oligos_6nt_mkv2_m3 versus 7278_WOX13_2_ArabidopsisPBM_20140210_; m=1/9; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.907285; --tttAATTaam ; cor=; Ncor= a 0 0 22 16 20 81 81 8 10 59 57 27 c 0 0 22 15 17 6 2 9 3 4 11 34 g 0 0 19 11 4 3 9 2 6 17 16 20 t 0 0 37 58 59 10 8 81 81 20 16 19
7184_AHL12_2_ArabidopsisPBM_20140210__shift2 (7184_AHL12_2_ArabidopsisPBM_20140210_)				; oligos_6nt_mkv2_m3 versus 7184_AHL12_2_ArabidopsisPBM_20140210_; m=2/9; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.826396; --rwwAWWTwwT ; cor=; Ncor= a 0 0 34 56 37 79 74 25 20 59 40 5 c 0 0 9 2 2 0 0 1 1 2 2 18 g 0 0 42 2 2 1 1 0 0 2 3 3 t 0 0 15 40 59 20 25 74 79 37 55 74
7231_ICU4_ArabidopsisPBM_20140210__rc_shift1 (7231_ICU4_ArabidopsisPBM_20140210__rc)				; oligos_6nt_mkv2_m3 versus 7231_ICU4_ArabidopsisPBM_20140210__rc; m=3/9; ncol2=10; w=-1; offset=-1; strand=R; shift=1; score=0.642993; -TAAThATTAc- ; cor=; Ncor= a 0 9 72 93 4 38 93 3 3 68 9 0 c 0 17 19 3 1 28 2 1 6 6 64 0 g 0 6 6 1 2 7 1 3 19 17 7 0 t 0 68 3 3 93 27 4 93 72 9 20 0
7284_YAB5_ArabidopsisPBM_20140210__shift1 (7284_YAB5_ArabidopsisPBM_20140210_)				; oligos_6nt_mkv2_m3 versus 7284_YAB5_ArabidopsisPBM_20140210_; m=4/9; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.634603; -waATgAtTAh- ; cor=; Ncor= a 0 28 53 78 7 18 78 10 15 73 29 0 c 0 23 8 9 16 24 5 18 4 17 26 0 g 0 22 18 5 3 53 2 5 10 6 16 0 t 0 27 21 8 74 5 15 67 71 4 29 0
7189_AHL25_ArabidopsisPBM_20140210__shift0 (7189_AHL25_ArabidopsisPBM_20140210_)				; oligos_6nt_mkv2_m3 versus 7189_AHL25_ArabidopsisPBM_20140210_; m=5/9; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.549813; dAwTTAAwTw-- ; cor=; Ncor= a 30 87 62 21 23 77 79 38 5 39 0 0 c 17 3 0 0 0 0 0 0 5 16 0 0 g 28 5 1 0 0 0 0 0 3 9 0 0 t 25 5 37 79 77 23 21 62 87 36 0 0
7187_AHL20_2_ArabidopsisPBM_20140210__shift4 (7187_AHL20_2_ArabidopsisPBM_20140210_)				; oligos_6nt_mkv2_m3 versus 7187_AHL20_2_ArabidopsisPBM_20140210_; m=6/9; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.547395; ----hAATTAAw ; cor=; Ncor= a 0 0 0 0 28 77 75 13 24 77 84 65 c 0 0 0 0 27 7 1 0 1 0 1 1 g 0 0 0 0 9 7 1 1 1 0 0 0 t 0 0 0 0 36 9 23 86 74 23 15 34
7183_AHL12_ArabidopsisPBM_20140210__rc_shift0 (7183_AHL12_ArabidopsisPBM_20140210__rc)				; oligos_6nt_mkv2_m3 versus 7183_AHL12_ArabidopsisPBM_20140210__rc; m=7/9; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score=0.514619; wAAwwwwTTw-- ; cor=; Ncor= a 37 77 84 49 33 66 50 10 6 42 0 0 c 13 2 4 1 1 0 0 2 15 13 0 0 g 11 15 2 0 0 1 2 4 2 8 0 0 t 39 6 10 50 66 33 48 84 77 37 0 0
7205_ATHB51_ArabidopsisPBM_20140210__rc_shift0 (7205_ATHB51_ArabidopsisPBM_20140210__rc)				; oligos_6nt_mkv2_m3 versus 7205_ATHB51_ArabidopsisPBM_20140210__rc; m=8/9; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score=0.504544; kCAATwATKr-- ; cor=; Ncor= a 21 10 96 99 0 58 99 2 6 32 0 0 c 21 78 1 0 1 0 0 0 0 16 0 0 g 26 2 3 0 0 1 1 0 25 38 0 0 t 32 10 0 1 99 41 0 98 69 14 0 0
7191_AHL25_3_ArabidopsisPBM_20140210__shift0 (7191_AHL25_3_ArabidopsisPBM_20140210_)				; oligos_6nt_mkv2_m3 versus 7191_AHL25_3_ArabidopsisPBM_20140210_; m=9/9; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.486321; waWwWwAwTw-- ; cor=; Ncor= a 37 54 74 39 29 49 83 37 8 28 0 0 c 18 9 0 1 0 0 0 1 3 9 0 0 g 16 15 1 0 0 0 1 0 6 7 0 0 t 29 22 25 60 71 51 16 62 83 56 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=13; shift=0; ncol=13; ytcACCAACCCmm ; Alignment reference a 9 11 11 46 0 0 44 45 11 1 11 19 18 c 14 6 27 1 50 47 1 2 38 42 34 18 17 g 4 7 5 0 0 1 1 2 1 0 4 5 7 t 23 26 7 3 0 2 4 1 0 7 1 8 8
7237_MYB111_2_ArabidopsisPBM_20140210__rc_shift1 (7237_MYB111_2_ArabidopsisPBM_20140210__rc)				; oligos_6nt_mkv2_m1 versus 7237_MYB111_2_ArabidopsisPBM_20140210__rc; m=1/5; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.613959; -cYAMCwACCt-- ; cor=; Ncor= a 0 13 0 97 26 0 37 99 14 1 22 0 0 c 0 58 68 0 73 98 3 1 85 93 11 0 0 g 0 13 2 1 1 0 1 0 0 0 10 0 0 t 0 16 30 2 0 2 59 0 1 6 57 0 0
7242_MYB55_ArabidopsisPBM_20140210__shift2 (7242_MYB55_ArabidopsisPBM_20140210_)				; oligos_6nt_mkv2_m1 versus 7242_MYB55_ArabidopsisPBM_20140210_; m=2/5; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.601847; --yACCTAMCGv- ; cor=; Ncor= a 0 0 11 98 5 0 23 98 27 0 12 25 0 c 0 0 36 0 95 99 5 0 73 96 5 28 0 g 0 0 5 2 0 0 2 2 0 0 76 30 0 t 0 0 48 0 0 1 70 0 0 4 7 17 0
7236_MYB111_ArabidopsisPBM_20140210__rc_shift1 (7236_MYB111_ArabidopsisPBM_20140210__rc)				; oligos_6nt_mkv2_m1 versus 7236_MYB111_ArabidopsisPBM_20140210__rc; m=3/5; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.578132; -syACCTAmCh-- ; cor=; Ncor= a 0 15 5 99 13 0 11 98 36 1 34 0 0 c 0 46 39 0 85 98 1 0 64 76 28 0 0 g 0 32 3 0 1 0 1 2 0 0 10 0 0 t 0 7 53 1 1 2 87 0 0 23 28 0 0
7238_MYB46_ArabidopsisPBM_20140210__rc_shift1 (7238_MYB46_ArabidopsisPBM_20140210__rc)				; oligos_6nt_mkv2_m1 versus 7238_MYB46_ArabidopsisPBM_20140210__rc; m=4/5; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.569328; -yyACCTAmCt-- ; cor=; Ncor= a 0 15 4 96 9 0 12 98 61 1 20 0 0 c 0 37 36 0 91 100 1 0 39 91 22 0 0 g 0 22 2 4 0 0 3 1 0 0 16 0 0 t 0 26 58 0 0 0 84 1 0 8 42 0 0
7243_MYB55_2_ArabidopsisPBM_20140210__rc_shift4 (7243_MYB55_2_ArabidopsisPBM_20140210__rc)				; oligos_6nt_mkv2_m1 versus 7243_MYB55_2_ArabidopsisPBM_20140210__rc; m=5/5; ncol2=10; w=0; offset=4; strand=R; shift=4; score=0.459937; ----cCAmCCAMC ; cor=; Ncor= a 0 0 0 0 13 2 96 54 1 17 91 28 2 c 0 0 0 0 62 83 2 44 98 69 0 70 89 g 0 0 0 0 11 5 0 1 0 3 8 1 1 t 0 0 0 0 14 10 2 1 1 11 1 1 8

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=14; shift=0; ncol=14; mtTcACCAACCCmm ; Alignment reference a 15 7 3 4 34 1 0 33 35 4 1 4 11 11 c 10 6 2 22 1 34 35 0 1 31 29 29 14 13 g 3 2 3 4 0 0 0 1 0 2 1 4 4 5 t 9 22 29 7 2 2 2 3 1 0 6 0 8 8
7242_MYB55_ArabidopsisPBM_20140210__shift3 (7242_MYB55_ArabidopsisPBM_20140210_)				; oligos_7nt_mkv2_m1 versus 7242_MYB55_ArabidopsisPBM_20140210_; m=1/3; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.550159; ---yACCTAMCGv- ; cor=; Ncor= a 0 0 0 11 98 5 0 23 98 27 0 12 25 0 c 0 0 0 36 0 95 99 5 0 73 96 5 28 0 g 0 0 0 5 2 0 0 2 2 0 0 76 30 0 t 0 0 0 48 0 0 1 70 0 0 4 7 17 0
7237_MYB111_2_ArabidopsisPBM_20140210__rc_shift2 (7237_MYB111_2_ArabidopsisPBM_20140210__rc)				; oligos_7nt_mkv2_m1 versus 7237_MYB111_2_ArabidopsisPBM_20140210__rc; m=2/3; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.547096; --cYAMCwACCt-- ; cor=; Ncor= a 0 0 13 0 97 26 0 37 99 14 1 22 0 0 c 0 0 58 68 0 73 98 3 1 85 93 11 0 0 g 0 0 13 2 1 1 0 1 0 0 0 10 0 0 t 0 0 16 30 2 0 2 59 0 1 6 57 0 0
7236_MYB111_ArabidopsisPBM_20140210__rc_shift2 (7236_MYB111_ArabidopsisPBM_20140210__rc)				; oligos_7nt_mkv2_m1 versus 7236_MYB111_ArabidopsisPBM_20140210__rc; m=3/3; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.503565; --syACCTAmCh-- ; cor=; Ncor= a 0 0 15 5 99 13 0 11 98 36 1 34 0 0 c 0 0 46 39 0 85 98 1 0 64 76 28 0 0 g 0 0 32 3 0 1 0 1 2 0 0 10 0 0 t 0 0 7 53 1 1 2 87 0 0 23 28 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv2_m1_shift0 (oligos_8nt_mkv2_m1)				; oligos_8nt_mkv2_m1; m=0 (reference); ncol1=15; shift=0; ncol=15; mtTCACCAACCmCmm ; Alignment reference a 12 5 3 0 27 1 0 26 26 4 0 8 4 11 9 c 9 6 3 22 0 28 29 0 1 24 27 17 20 10 9 g 2 2 0 3 0 0 0 0 2 1 0 3 2 6 4 t 6 16 23 4 2 0 0 3 0 0 2 1 3 2 7
7237_MYB111_2_ArabidopsisPBM_20140210__rc_shift2 (7237_MYB111_2_ArabidopsisPBM_20140210__rc)				; oligos_8nt_mkv2_m1 versus 7237_MYB111_2_ArabidopsisPBM_20140210__rc; m=1/6; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.540576; --cYAMCwACCt--- ; cor=; Ncor= a 0 0 13 0 97 26 0 37 99 14 1 22 0 0 0 c 0 0 58 68 0 73 98 3 1 85 93 11 0 0 0 g 0 0 13 2 1 1 0 1 0 0 0 10 0 0 0 t 0 0 16 30 2 0 2 59 0 1 6 57 0 0 0
7242_MYB55_ArabidopsisPBM_20140210__shift3 (7242_MYB55_ArabidopsisPBM_20140210_)				; oligos_8nt_mkv2_m1 versus 7242_MYB55_ArabidopsisPBM_20140210_; m=2/6; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.520683; ---yACCTAMCGv-- ; cor=; Ncor= a 0 0 0 11 98 5 0 23 98 27 0 12 25 0 0 c 0 0 0 36 0 95 99 5 0 73 96 5 28 0 0 g 0 0 0 5 2 0 0 2 2 0 0 76 30 0 0 t 0 0 0 48 0 0 1 70 0 0 4 7 17 0 0
7243_MYB55_2_ArabidopsisPBM_20140210__rc_shift5 (7243_MYB55_2_ArabidopsisPBM_20140210__rc)				; oligos_8nt_mkv2_m1 versus 7243_MYB55_2_ArabidopsisPBM_20140210__rc; m=3/6; ncol2=10; w=0; offset=5; strand=R; shift=5; score=0.496655; -----cCAmCCAMCg ; cor=; Ncor= a 0 0 0 0 0 13 2 96 54 1 17 91 28 2 24 c 0 0 0 0 0 62 83 2 44 98 69 0 70 89 14 g 0 0 0 0 0 11 5 0 1 0 3 8 1 1 54 t 0 0 0 0 0 14 10 2 1 1 11 1 1 8 8
7236_MYB111_ArabidopsisPBM_20140210__rc_shift2 (7236_MYB111_ArabidopsisPBM_20140210__rc)				; oligos_8nt_mkv2_m1 versus 7236_MYB111_ArabidopsisPBM_20140210__rc; m=4/6; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.484147; --syACCTAmCh--- ; cor=; Ncor= a 0 0 15 5 99 13 0 11 98 36 1 34 0 0 0 c 0 0 46 39 0 85 98 1 0 64 76 28 0 0 0 g 0 0 32 3 0 1 0 1 2 0 0 10 0 0 0 t 0 0 7 53 1 1 2 87 0 0 23 28 0 0 0
7238_MYB46_ArabidopsisPBM_20140210__rc_shift2 (7238_MYB46_ArabidopsisPBM_20140210__rc)				; oligos_8nt_mkv2_m1 versus 7238_MYB46_ArabidopsisPBM_20140210__rc; m=5/6; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.483323; --yyACCTAmCt--- ; cor=; Ncor= a 0 0 15 4 96 9 0 12 98 61 1 20 0 0 0 c 0 0 37 36 0 91 100 1 0 39 91 22 0 0 0 g 0 0 22 2 4 0 0 3 1 0 0 16 0 0 0 t 0 0 26 58 0 0 0 84 1 0 8 42 0 0 0
7239_MYB46_2_ArabidopsisPBM_20140210__shift5 (7239_MYB46_2_ArabidopsisPBM_20140210_)				; oligos_8nt_mkv2_m1 versus 7239_MYB46_2_ArabidopsisPBM_20140210_; m=6/6; ncol2=10; w=0; offset=5; strand=D; shift=5; score= 0.4743; -----yyAACCAmCr ; cor=; Ncor= a 0 0 0 0 0 16 5 92 82 1 21 82 25 6 31 c 0 0 0 0 0 29 53 3 13 96 68 1 64 72 19 g 0 0 0 0 0 24 13 3 2 1 7 16 2 3 39 t 0 0 0 0 0 31 29 2 3 2 4 1 9 19 11

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m1_shift0 (dyads_m1)				; dyads_m1; m=0 (reference); ncol1=16; shift=0; ncol=16; htTCACCAACCmCmhm ; Alignment reference a 14 8 4 1 33 2 0 32 33 5 1 12 5 11 13 11 c 11 6 4 25 1 34 35 0 1 30 30 20 25 17 10 16 g 2 3 0 3 0 0 0 0 2 1 2 3 2 6 4 2 t 9 19 28 7 2 0 1 4 0 0 3 1 4 2 9 7
7237_MYB111_2_ArabidopsisPBM_20140210__rc_shift2 (7237_MYB111_2_ArabidopsisPBM_20140210__rc)				; dyads_m1 versus 7237_MYB111_2_ArabidopsisPBM_20140210__rc; m=1/6; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.506963; --cYAMCwACCt---- ; cor=; Ncor= a 0 0 13 0 97 26 0 37 99 14 1 22 0 0 0 0 c 0 0 58 68 0 73 98 3 1 85 93 11 0 0 0 0 g 0 0 13 2 1 1 0 1 0 0 0 10 0 0 0 0 t 0 0 16 30 2 0 2 59 0 1 6 57 0 0 0 0
7243_MYB55_2_ArabidopsisPBM_20140210__rc_shift5 (7243_MYB55_2_ArabidopsisPBM_20140210__rc)				; dyads_m1 versus 7243_MYB55_2_ArabidopsisPBM_20140210__rc; m=2/6; ncol2=10; w=0; offset=5; strand=R; shift=5; score=0.487275; -----cCAmCCAMCg- ; cor=; Ncor= a 0 0 0 0 0 13 2 96 54 1 17 91 28 2 24 0 c 0 0 0 0 0 62 83 2 44 98 69 0 70 89 14 0 g 0 0 0 0 0 11 5 0 1 0 3 8 1 1 54 0 t 0 0 0 0 0 14 10 2 1 1 11 1 1 8 8 0
7242_MYB55_ArabidopsisPBM_20140210__shift3 (7242_MYB55_ArabidopsisPBM_20140210_)				; dyads_m1 versus 7242_MYB55_ArabidopsisPBM_20140210_; m=3/6; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.487266; ---yACCTAMCGv--- ; cor=; Ncor= a 0 0 0 11 98 5 0 23 98 27 0 12 25 0 0 0 c 0 0 0 36 0 95 99 5 0 73 96 5 28 0 0 0 g 0 0 0 5 2 0 0 2 2 0 0 76 30 0 0 0 t 0 0 0 48 0 0 1 70 0 0 4 7 17 0 0 0
7239_MYB46_2_ArabidopsisPBM_20140210__shift5 (7239_MYB46_2_ArabidopsisPBM_20140210_)				; dyads_m1 versus 7239_MYB46_2_ArabidopsisPBM_20140210_; m=4/6; ncol2=10; w=0; offset=5; strand=D; shift=5; score=0.468282; -----yyAACCAmCr- ; cor=; Ncor= a 0 0 0 0 0 16 5 92 82 1 21 82 25 6 31 0 c 0 0 0 0 0 29 53 3 13 96 68 1 64 72 19 0 g 0 0 0 0 0 24 13 3 2 1 7 16 2 3 39 0 t 0 0 0 0 0 31 29 2 3 2 4 1 9 19 11 0
7236_MYB111_ArabidopsisPBM_20140210__rc_shift2 (7236_MYB111_ArabidopsisPBM_20140210__rc)				; dyads_m1 versus 7236_MYB111_ArabidopsisPBM_20140210__rc; m=5/6; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.458992; --syACCTAmCh---- ; cor=; Ncor= a 0 0 15 5 99 13 0 11 98 36 1 34 0 0 0 0 c 0 0 46 39 0 85 98 1 0 64 76 28 0 0 0 0 g 0 0 32 3 0 1 0 1 2 0 0 10 0 0 0 0 t 0 0 7 53 1 1 2 87 0 0 23 28 0 0 0 0
7238_MYB46_ArabidopsisPBM_20140210__rc_shift2 (7238_MYB46_ArabidopsisPBM_20140210__rc)				; dyads_m1 versus 7238_MYB46_ArabidopsisPBM_20140210__rc; m=6/6; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.454609; --yyACCTAmCt---- ; cor=; Ncor= a 0 0 15 4 96 9 0 12 98 61 1 20 0 0 0 0 c 0 0 37 36 0 91 100 1 0 39 91 22 0 0 0 0 g 0 0 22 2 4 0 0 3 1 0 0 16 0 0 0 0 t 0 0 26 58 0 0 0 84 1 0 8 42 0 0 0 0