peak-motifs list

Motif discovery

Motif 1 oligos_6nt_mkv1_m1

k-mer sig=5.92; evalue=1.2e-06

gaGAGaGaGrG

CYCTCTCTCTC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gaGAGaGaGrG

RAMOSA1 MA1416.1 D 11 0.7857 0.951 0.747 NA NA

BPC6 MA1402.1 R 11 0.5238 0.934 0.489 NA NA

AT3G46070 MA1381.2 R 7 0.6364 0.753 0.479 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13 (76.47%)
Max nb of predicted sites per peak: 15
(AT5G20950)
Mean nb of predicted sites per peak: 4.54

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv1_m2

k-mer sig=5.87; evalue=1.3e-06

trTATATaTRya

TRYATATATAYA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor trTATATaTRya

AHL13 MA2374.1 D 8 0.6667 0.765 0.510 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 11
(CCoAOMT1)
Mean nb of predicted sites per peak: 5.45

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv1_m3

k-mer sig=4.25; evalue=5.6e-05

vyyCACCaaCCCssc

GSSGGGTTGGTGRRB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vyyCACCaaCCCssc

RAX3 MA0576.2 R 12 0.8000 0.820 0.656 NA NA

MYB43 MA1772.2 D 12 0.8000 0.799 0.639 NA NA

MYB51 MA1773.2 D 11 0.7333 0.851 0.624 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 6
(HST)
Mean nb of predicted sites per peak: 2.91

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv1_m4

k-mer sig=5.92; evalue=1.2e-06

gakaGaGAGararrg

CYYTYTCTCTCTMTC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gakaGaGAGararrg

RAMOSA1 MA1416.1 D 14 0.9333 0.855 0.798 NA NA

BPC6 MA1402.1 R 15 0.7143 0.842 0.601 NA NA

BPC1 MA1404.1 D 15 0.6250 0.821 0.513 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 13
(AT5G20950)
Mean nb of predicted sites per peak: 5.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv1_m5

k-mer sig=2.32; evalue=0.0048

ykTCtCCACyh

DRGTGGAGAMR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ykTCtCCACyh

PK23964.1 MA2086.1 D 7 0.6364 0.724 0.461 NA NA

AGL55 MA1202.1 D 6 0.5455 0.808 0.441 NA NA

bHLH112 MA0961.2 D 6 0.5000 0.842 0.421 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (47.06%)
Max nb of predicted sites per peak: 6
(CYP98A3)
Mean nb of predicted sites per peak: 2.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_mkv1_m6

k-mer sig=2.30; evalue=0.005

mvAAAACAaa

TTTGTTTTBK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mvAAAACAaa

REF6 MA1415.2 D 8 0.7273 0.800 0.582 NA NA

SGR5 MA1159.2 D 10 0.7692 0.724 0.557 NA NA

GTL1 MA1661.2 D 6 0.5000 0.874 0.437 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2 (11.76%)
Max nb of predicted sites per peak: 1
(HST)
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_mkv1_m7

k-mer sig=1.85; evalue=0.014

mwAAGAAAarr

YYTTTTCTTWK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mwAAGAAAarr

Zm00001d027846 MA1823.2 D 8 0.7273 0.961 0.699 NA NA

SGR5 MA1159.2 D 11 0.8462 0.755 0.639 NA NA

DOF1.7 MA1277.2 D 10 0.8333 0.759 0.632 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13 (76.47%)
Max nb of predicted sites per peak: 5
(HST)
Mean nb of predicted sites per peak: 1.69

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_mkv1_m8

k-mer sig=1.82; evalue=0.015

rbSCATGCayg

CRTGCATGSVY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rbSCATGCayg

GLYMA-08G357600 MA1810.2 R 9 0.8182 0.882 0.722 NA NA

FUS3 MA0565.3 D 7 0.6364 0.880 0.560 NA NA

LEC2 MA0581.2 D 6 0.5455 0.974 0.531 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (47.06%)
Max nb of predicted sites per peak: 8
(CYP82C4)
Mean nb of predicted sites per peak: 3.38

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6nt_mkv1_m9

k-mer sig=4.25; evalue=5.6e-05

mytCaCCaACCCcvc

GBGGGGTTGGTGARK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mytCaCCaACCCcvc

MYB43 MA1772.2 D 12 0.8000 0.819 0.655 NA NA

MYB51 MA1773.2 D 11 0.7333 0.838 0.615 NA NA

MYB63 MA2024.2 D 11 0.7333 0.831 0.609 NA NA

Total matches= 29 (26 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12 (70.59%)
Max nb of predicted sites per peak: 5
(CYP73A5)
Mean nb of predicted sites per peak: 2.67

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6nt_mkv1_m10

k-mer sig=1.78; evalue=0.017

mcCCACCACmv

BKGTGGTGGGK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mcCCACCACmv

MYB60 MA1774.2 D 10 0.9091 0.705 0.641 NA NA

MYB58 MA2042.2 D 9 0.8182 0.767 0.628 NA NA

MYB83 MA1779.2 D 8 0.7273 0.815 0.592 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 4
(SYP122)
Mean nb of predicted sites per peak: 2.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv1_m1

k-mer sig=6.08; evalue=8.3e-07

mytCACCaACCCCm

KGGGGTTGGTGARK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mytCACCaACCCCm

MYB43 MA1772.2 D 12 0.8571 0.805 0.690 NA NA

MYB51 MA1773.2 D 11 0.7857 0.822 0.646 NA NA

MYB63 MA2024.2 D 11 0.7857 0.806 0.633 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12 (70.59%)
Max nb of predicted sites per peak: 5
(CYP73A5)
Mean nb of predicted sites per peak: 2.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv1_m2

k-mer sig=5.64; evalue=2.3e-06

yCtCTCTCTCtc

GAGAGAGAGAGR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yCtCTCTCTCtc

RAMOSA1 MA1416.1 R 12 0.8571 0.964 0.826 NA NA

BPC6 MA1402.1 D 12 0.5714 0.952 0.544 NA NA

BPC1 MA1404.1 R 12 0.5000 0.946 0.473 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 12
(AT5G20950)
Mean nb of predicted sites per peak: 4.60

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv1_m3

k-mer sig=3.09; evalue=0.00081

rkrtatATaTayay

RTRTATATATAYMY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkrtatATaTayay

AHL13 MA2374.1 R 8 0.5714 0.822 0.470 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 12
(CCoAOMT1)
Mean nb of predicted sites per peak: 6.44

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv1_m4

k-mer sig=2.57; evalue=0.0027

wvaCGSCGtywr

YWRACGSCGTBW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wvaCGSCGtywr

MYB3R3 MA2343.1 D 8 0.6667 0.883 0.589 NA NA

ERF4 MA0992.3 D 9 0.7500 0.725 0.544 NA NA

JUB1 MA2017.2 R 7 0.5833 0.868 0.506 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7 (41.18%)
Max nb of predicted sites per peak: 8
(CYP73A5)
Mean nb of predicted sites per peak: 3.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv1_m5

k-mer sig=1.86; evalue=0.014

kyGGtGGaGamk

MKTCTCCACCRM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kyGGtGGaGamk

LBD13 MA2021.2 R 8 0.6667 0.850 0.566 NA NA

ERF014 MA1222.1 R 12 0.8000 0.706 0.565 NA NA

ERF012 MA1248.2 R 7 0.5385 0.842 0.453 NA NA

Total matches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 7
(CYP98A3)
Mean nb of predicted sites per peak: 2.36

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_7nt_mkv1_m6

k-mer sig=1.04; evalue=0.091

yrCaTGCAtGyr

YRCATGCATGYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yrCaTGCAtGyr

GLYMA-08G357600 MA1810.2 D 9 0.7500 0.892 0.669 NA NA

FUS3 MA0565.3 D 7 0.5833 0.934 0.545 NA NA

LEC2 MA0581.2 D 6 0.5000 0.958 0.479 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 13
(CYP82C4)
Mean nb of predicted sites per peak: 3.56

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 oligos_7nt_mkv1_m7

k-mer sig=1.04; evalue=0.091

ksaCCaamCCmv

BKGGKTTGGTSM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ksaCCaamCCmv

MYB49 MA2028.2 D 11 0.9167 0.721 0.661 NA NA

MYB93 MA2025.2 D 8 0.6667 0.978 0.652 NA NA

MYB10 MA1762.2 D 10 0.8333 0.777 0.648 NA NA

Total matches= 31 (28 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 7
(4CL1)
Mean nb of predicted sites per peak: 2.91

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 oligos_7nt_mkv1_m8

k-mer sig=0.68; evalue=0.21

rraGaGaaaarg

CYTTTTCTCTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rraGaGaaaarg

MGP MA1158.2 D 11 0.7857 0.706 0.555 NA NA

Zm00001d027846 MA1823.2 D 8 0.6667 0.813 0.542 NA NA

SGR5 MA1159.2 D 10 0.6667 0.781 0.520 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14 (82.35%)
Max nb of predicted sites per peak: 6
(AT5G20950)
Mean nb of predicted sites per peak: 2.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 oligos_7nt_mkv1_m9

k-mer sig=0.68; evalue=0.21

rgaaGaaGavr

YBTCTTCTTCY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rgaaGaaGavr

PI MA0559.1 D 11 0.7857 0.740 0.582 NA NA

Zm00001d027846 MA1823.2 D 8 0.7273 0.739 0.538 NA NA

NTL8 MA1678.3 D 7 0.5833 0.873 0.509 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 5
(CYP98A3)
Mean nb of predicted sites per peak: 2.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 oligos_7nt_mkv1_m10

k-mer sig=0.53; evalue=0.3

draGaGtGGRrm

KYYCCACTCTYH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor draGaGtGGRrm

AZF1 MA2372.1 R 9 0.7500 0.711 0.533 NA NA

TCP19 MA1063.2 R 7 0.5385 0.831 0.447 NA NA

TCP8 MA1428.2 R 7 0.5385 0.830 0.447 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 15 (88.24%)
Max nb of predicted sites per peak: 7
(AT5G20950)
Mean nb of predicted sites per peak: 2.93

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 oligos_8nt_mkv1_m1

k-mer sig=8.55; evalue=2.8e-09

smytCACCaaCCCCvc

GBGGGGTTGGTGARKS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor smytCACCaaCCCCvc

MYB43 MA1772.2 D 12 0.7500 0.799 0.600 NA NA

RAX3 MA0576.2 R 12 0.7500 0.794 0.595 NA NA

MYB63 MA2024.2 D 11 0.6875 0.857 0.589 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 5
(CYP73A5)
Mean nb of predicted sites per peak: 2.64

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 oligos_8nt_mkv1_m2

k-mer sig=6.51; evalue=3.1e-07

gaGaGaGaGaGrG

CYCTCTCTCTCTC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gaGaGaGaGaGrG

RAMOSA1 MA1416.1 D 13 0.9286 0.952 0.884 NA NA

BPC6 MA1402.1 R 13 0.6190 0.942 0.583 NA NA

BPC1 MA1404.1 D 13 0.5417 0.933 0.506 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12 (70.59%)
Max nb of predicted sites per peak: 15
(AT5G20950)
Mean nb of predicted sites per peak: 4.92

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 oligos_8nt_mkv1_m3

k-mer sig=4.37; evalue=4.3e-05

kryatATAtatakab

VTMTATATATATRYM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kryatATAtatakab

AHL13 MA2374.1 D 8 0.5333 0.829 0.442 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 9
(CCoAOMT1)
Mean nb of predicted sites per peak: 4.64

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 oligos_8nt_mkv1_m4

k-mer sig=3.87; evalue=0.00013

gktGGtGGaGamk

MKTCTCCACCAMC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gktGGtGGaGamk

MYB58 MA2042.2 R 8 0.5714 0.858 0.490 NA NA

LBD13 MA2021.2 R 8 0.6154 0.777 0.478 NA NA

ERF012 MA1248.2 R 8 0.6154 0.719 0.443 NA NA

Total matches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 7
(CYP98A3)
Mean nb of predicted sites per peak: 2.64

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 oligos_8nt_mkv1_m5

k-mer sig=3.48; evalue=0.00033

cwaaCGGCGtbk

MVACGCCGTTWG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cwaaCGGCGtbk

MYB3R3 MA2343.1 R 8 0.6667 0.912 0.608 NA NA

ERF4 MA0992.3 R 9 0.7500 0.711 0.533 NA NA

JUB1 MA2017.2 D 7 0.5833 0.893 0.521 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 8
(CYP73A5)
Mean nb of predicted sites per peak: 2.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 26 oligos_8nt_mkv1_m6

k-mer sig=2.39; evalue=0.0041

mmGAAAaCAAarc

GYTTTGTTTTCKK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mmGAAAaCAAarc

SGR5 MA1159.2 D 12 0.8571 0.772 0.662 NA NA

JKD MA1156.2 R 12 0.9231 0.701 0.647 NA NA

Zm00001d027846 MA1823.2 D 8 0.6154 0.825 0.508 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 5
(HST)
Mean nb of predicted sites per peak: 1.82

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 27 oligos_8nt_mkv1_m7

k-mer sig=1.37; evalue=0.043

tsrtGCaTGCaysa

TSRTGCATGCAYSA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tsrtGCaTGCaysa

GLYMA-08G357600 MA1810.2 D 9 0.6429 0.984 0.633 NA NA

ABI3 MA0564.2 D 6 0.4286 0.998 0.428 NA NA

TEIL MA2362.1 R 8 0.5714 0.741 0.424 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (35.29%)
Max nb of predicted sites per peak: 13
(CYP82C4)
Mean nb of predicted sites per peak: 4.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 28 oligos_8nt_mkv1_m8

k-mer sig=4.37; evalue=4.3e-05

krYatATAtataCmy

RKGTATATATATRYM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krYatATAtataCmy

AHL13 MA2374.1 D 8 0.5333 0.801 0.427 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 10
(ABCG37)
Mean nb of predicted sites per peak: 5.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 29 oligos_8nt_mkv1_m9

k-mer sig=0.79; evalue=0.16

rkCaCAtGCAtg

CATGCATGTGMY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkCaCAtGCAtg

FUS3 MA0565.3 D 7 0.5833 0.992 0.578 NA NA

GLYMA-08G357600 MA1810.2 R 9 0.7500 0.704 0.528 NA NA

PIF5 MA0562.1 D 8 0.6667 0.781 0.521 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14 (82.35%)
Max nb of predicted sites per peak: 3
(PAL1)
Mean nb of predicted sites per peak: 1.71

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 30 oligos_8nt_mkv1_m10

k-mer sig=0.64; evalue=0.23

draCCaAmCCavv

BBTGGKTTGGTYH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor draCCaAmCCavv

MYB93 MA2025.2 D 8 0.6154 0.965 0.594 NA NA

MYB107 MA2007.2 D 8 0.6154 0.927 0.571 NA NA

MYB58 MA2042.2 D 9 0.6923 0.766 0.530 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12 (70.59%)
Max nb of predicted sites per peak: 6
(PAL2)
Mean nb of predicted sites per peak: 2.83

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 31 dyads_m1

k-mer sig=6.37; evalue=4.3e-07

mttCaCCaaCCCCSmc

GKSGGGGTTGGTGAAK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mttCaCCaaCCCCSmc

MYB43 MA1772.2 D 12 0.7500 0.805 0.603 NA NA

RAX3 MA0576.2 R 12 0.7500 0.804 0.603 NA NA

MYB63 MA2024.2 D 11 0.6875 0.863 0.593 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12 (70.59%)
Max nb of predicted sites per peak: 8
(4CL1)
Mean nb of predicted sites per peak: 2.83

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 32 dyads_m2

k-mer sig=3.75; evalue=0.00018

amvAAAACAaa

TTTGTTTTBKT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor amvAAAACAaa

SGR5 MA1159.2 D 11 0.8462 0.724 0.612 NA NA

REF6 MA1415.2 D 8 0.6667 0.800 0.533 NA NA

Zm00001d027846 MA1823.2 D 7 0.5833 0.787 0.459 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2 (11.76%)
Max nb of predicted sites per peak: 2
(HST)
Mean nb of predicted sites per peak: 1.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 33 dyads_m3

k-mer sig=2.12; evalue=0.0076

ygCaTGCatr

YATGCATGCR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ygCaTGCatr

GLYMA-08G357600 MA1810.2 R 9 0.9000 0.927 0.834 NA NA

FUS3 MA0565.3 D 7 0.7000 0.930 0.651 NA NA

LEC2 MA0581.2 D 6 0.6000 0.982 0.589 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 7
(CYP82C4)
Mean nb of predicted sites per peak: 3.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 34 dyads_m4

k-mer sig=1.33; evalue=0.047

dkCCCCwCtCtc

GAGAGWGGGGMH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor dkCCCCwCtCtc

ARALYDRAFT_495258 MA1095.1 D 8 0.6667 0.722 0.482 NA NA

ARALYDRAFT_484486 MA1098.1 D 8 0.6667 0.722 0.482 NA NA

TCP13 MA1282.2 R 8 0.5333 0.801 0.427 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 4
(CCoAOMT1)
Mean nb of predicted sites per peak: 2.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 35 dyads_m5

k-mer sig=1.18; evalue=0.066

syCtCTCTCtc

GAGAGAGAGRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syCtCTCTCtc

RAMOSA1 MA1416.1 R 11 0.7857 0.951 0.747 NA NA

BPC6 MA1402.1 D 11 0.5238 0.934 0.489 NA NA

AT3G46070 MA1381.2 D 7 0.6364 0.753 0.479 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 13
(AT5G20950)
Mean nb of predicted sites per peak: 4.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 36 dyads_m6

k-mer sig=0.72; evalue=0.19

ytCtCymycyyybtCtCtv

BAGAGAVRRRGRKRGAGAR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ytCtCymycyyybtCtCtv

BPC6 MA1402.1 D 19 0.9048 0.766 0.693 NA NA

BPC1 MA1404.1 R 19 0.7917 0.775 0.614 NA NA

RAMOSA1 MA1416.1 R 14 0.7368 0.758 0.559 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 15 (88.24%)
Max nb of predicted sites per peak: 7
(AT5G20950)
Mean nb of predicted sites per peak: 2.67

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 37 dyads_m7

k-mer sig=0.68; evalue=0.21

mvaCGGCGks

SMCGCCGTBK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mvaCGGCGks

ERF4 MA0992.3 R 9 0.9000 0.810 0.729 NA NA

ERF8 MA0994.3 D 10 0.9091 0.785 0.714 NA NA

MYB3R3 MA2343.1 R 8 0.8000 0.881 0.705 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (47.06%)
Max nb of predicted sites per peak: 8
(CYP73A5)
Mean nb of predicted sites per peak: 2.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 38 dyads_m8

k-mer sig=0.67; evalue=0.21

ctCtCkctckCtCyy

RRGAGMGAGMGAGAG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ctCtCkctckCtCyy

RAMOSA1 MA1416.1 R 14 0.9333 0.847 0.790 NA NA

BPC6 MA1402.1 D 15 0.7143 0.852 0.609 NA NA

BPC1 MA1404.1 R 15 0.6250 0.857 0.536 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13 (76.47%)
Max nb of predicted sites per peak: 10
(AT5G20950)
Mean nb of predicted sites per peak: 3.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 39 dyads_m9

k-mer sig=0.64; evalue=0.23

kmaCCaaACcm

KGGTTTGGTKM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kmaCCaaACcm

MYB49 MA2028.2 D 11 1.0000 0.806 0.806 NA NA

MYB10 MA1762.2 D 10 0.9091 0.785 0.714 NA NA

MYB108 MA2026.2 D 10 0.9091 0.785 0.714 NA NA

Total matches= 39 (36 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (47.06%)
Max nb of predicted sites per peak: 6
(PAL2)
Mean nb of predicted sites per peak: 2.88

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 40 dyads_m10

k-mer sig=6.37; evalue=4.3e-07

yytCaCCaACCCmmc

GKKGGGTTGGTGARR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yytCaCCaACCCmmc

MYB43 MA1772.2 D 12 0.8000 0.810 0.648 NA NA

MYB51 MA1773.2 D 11 0.7333 0.842 0.618 NA NA

MYB63 MA2024.2 D 11 0.7333 0.830 0.608 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12 (70.59%)
Max nb of predicted sites per peak: 6
(4CL1)
Mean nb of predicted sites per peak: 2.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_plants_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: list_up1 (26/02/2026 15:27)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor trTATATaTRya

AHL13 MA2374.1 D 8 0.6667 0.765 0.510 NA NA

Total matches= 1

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkrtatATaTayay

AHL13 MA2374.1 R 8 0.5714 0.822 0.470 NA NA

Total matches= 1

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kryatATAtatakab

AHL13 MA2374.1 D 8 0.5333 0.829 0.442 NA NA

Total matches= 1

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krYatATAtataCmy

AHL13 MA2374.1 D 8 0.5333 0.801 0.427 NA NA

Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: list_up1 (26/02/2026 15:27)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor trTATATaTRya AHL13 MA2374.1 D 8 0.6667 0.765 0.510 NA NA Total matches= 1

JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rkrtatATaTayay AHL13 MA2374.1 R 8 0.5714 0.822 0.470 NA NA Total matches= 1

JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor kryatATAtatakab AHL13 MA2374.1 D 8 0.5333 0.829 0.442 NA NA Total matches= 1

JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor krYatATAtataCmy AHL13 MA2374.1 D 8 0.5333 0.801 0.427 NA NA Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor trTATATaTRya

AHL13 MA2374.1 D 8 0.6667 0.765 0.510 NA NA

Total matches= 1

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkrtatATaTayay

AHL13 MA2374.1 R 8 0.5714 0.822 0.470 NA NA

Total matches= 1

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kryatATAtatakab

AHL13 MA2374.1 D 8 0.5333 0.829 0.442 NA NA

Total matches= 1

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krYatATAtataCmy

AHL13 MA2374.1 D 8 0.5333 0.801 0.427 NA NA

Total matches= 1